View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10659_low_3 (Length: 390)
Name: NF10659_low_3
Description: NF10659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10659_low_3 |
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| [»] scaffold0064 (3 HSPs) |
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Alignment Details
Target: scaffold0064 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 54913 - 55014
Alignment:
| Q |
260 |
ccttgtgacttttttatgaaggaatctaccatgtgacttgtgaatgtgaatgtggaaaccaagatgaaaccactaggcacacgattataaaggtatctga |
359 |
Q |
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| T |
54913 |
ccttgtgacttttttatgaaggaatctaccatgtgacttgtgaatgtgaatgtggaaaccaagatgaaaccactaggtacacgattataaaggcatctga |
55012 |
T |
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| Q |
360 |
aa |
361 |
Q |
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|| |
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| T |
55013 |
aa |
55014 |
T |
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Target: scaffold0064; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 54804 - 54886
Alignment:
| Q |
151 |
aagaaacagctcatggtatttttaaatatatatgacatgacttcaatatgtctaaaatcaacgttactttaatatattgttcg |
233 |
Q |
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| T |
54804 |
aagaaacagctcatggtatttttaaatatatatgacatgacttcaatatgtctaaaatcaacgttactttaatatatggttcg |
54886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 54660 - 54712
Alignment:
| Q |
1 |
aagtgcatttaagccttgaaaaatcctcatgagagttgatacaagaaatagac |
53 |
Q |
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| T |
54660 |
aagtgcatttaagccttgaaaaatccttatgagagttgatacaagaaatagac |
54712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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