View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10659_low_4 (Length: 363)
Name: NF10659_low_4
Description: NF10659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10659_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 344
Target Start/End: Complemental strand, 33117715 - 33117391
Alignment:
| Q |
25 |
ctattagaattttgttatcggactaccaactatttatatctacacgctaaactcaataatgatggacgtgaaagagtgttaaaaagtctcgcattgaatt |
124 |
Q |
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| T |
33117715 |
ctattaggatttcgttatcggactaccaactatttatatctacacactaaactcaataatgatggacgtgaaagagtattaaaaaatttcacattaaatt |
33117616 |
T |
|
| Q |
125 |
agatataacttaaatatgtgtttataaataggtgcaatctcactttacaagttggttttatagatttgtattaaactaaaccacgtattctaatagttgt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||||| ||||||| ||||||||||||| | |
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| T |
33117615 |
agatataacttaaatatgtgtttataaataggtgcaatctcactttacaaattagttttatggagttgtattaaaccaaaccacttattctaatagttct |
33117516 |
T |
|
| Q |
225 |
atttcaatcttgattgattccttttcctcacgaagtctctgtatttaatttgtataattttggagggtaattgcacgggtatc-----aagtgtaaaata |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33117515 |
atttcaatcttgattgattccttttcctcacgaagtctctgtatttaatttgtataattttggagggtaattgcacgggtatcaagtaaagtgtaaaata |
33117416 |
T |
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| Q |
320 |
agagtgactacataaatactcaagt |
344 |
Q |
| |
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||||||||||||| ||||||||||| |
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| T |
33117415 |
agagtgactacattaatactcaagt |
33117391 |
T |
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