View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10659_low_8 (Length: 245)
Name: NF10659_low_8
Description: NF10659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10659_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38128915 - 38128684
Alignment:
| Q |
1 |
tgatttatccattgcaattctggaaatggtagtaaagagacataggataagggtggttgaagttaggactttatacagaagacatattggaccacaaaag |
100 |
Q |
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| T |
38128915 |
tgatttatccattgcaattctggaaatggtagtaaagagacataggataagggtggttgaagttaggactttatacagaagacatattggaccacaaaag |
38128816 |
T |
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| Q |
101 |
tttgtgtctttggtgtgtattaattttagtgtatccagctcattcaagtctatctggcaagcatgccaaaaatgctacaagtatacatgtcattgttttt |
200 |
Q |
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| T |
38128815 |
tttgtgtctttggtgtgtattaattttagtgtatccagctcattcaagtctatctggcaagcatgccaaaaatgctacaagtatacatgtcattgttttt |
38128716 |
T |
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| Q |
201 |
tctacagtaatcattttgtagattattgatgt |
232 |
Q |
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| T |
38128715 |
tctacagtaatcattttctagattattgatgt |
38128684 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 487542 - 487591
Alignment:
| Q |
1 |
tgatttatccattgcaattctggaaatggtagtaaagagacataggataa |
50 |
Q |
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| T |
487542 |
tgatttatccgttgcaattctggaaatggtaataaagagacataagataa |
487591 |
T |
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