View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1065_low_10 (Length: 251)
Name: NF1065_low_10
Description: NF1065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1065_low_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 95 - 251
Target Start/End: Original strand, 47285286 - 47285442
Alignment:
| Q |
95 |
gcaaactatgacctacctaaaacttaaacaaaatacattctccatgataattaatttgcaaacatctaatctaacctaatacaatcctcctaacaaatca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285286 |
gcaaactatgacctacctaaaacttaaacaaaatacattctccatgataattaatttgcaaacatctaatctaacctaatacaatcctcctaacaaatca |
47285385 |
T |
|
| Q |
195 |
atctaatctaacaaaccaatatctgcaactacattattacatgagttgcacccactc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285386 |
atctaatctaacaaaccaatatctgcaactacattattacatgagttgcacccactc |
47285442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University