View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1065_low_3 (Length: 422)
Name: NF1065_low_3
Description: NF1065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1065_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 29 - 411
Target Start/End: Complemental strand, 13891412 - 13891030
Alignment:
| Q |
29 |
aagatgcacataatcaattcaaaaactatactatcaacctccattacagtcannnnnnncctcccaaaatctatctatgcaaaacattttctaacaacaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13891412 |
aagatgcacataatcaattcaaaaactatactatcaacctccatcacagtcatttttttcctcccaaaatctatctatgcaaaacattttctaacaacaa |
13891313 |
T |
|
| Q |
129 |
cactacacacttcttgcctatatcattaaccaaagaacaacaaaaactttcattcaacatttctatcatcatccattaaacctcaccccaacaaagacat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13891312 |
cactacacacttcttgcctatatcattaaccaaagaacaacaaaaactttcattcaacatttctatcatcatccattaaacctcaccccaacaaagacat |
13891213 |
T |
|
| Q |
229 |
catcagcaccttcagtaaactccaattcacaatcctttccatccaaacccaaatcattaccaaaatcaaatcttgtcattctgttcacaacactcttcct |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13891212 |
catcagcaccttcagtaaactccaattcacaatcctttccatccaaacccaaatcattaccaaaatcaaatcttgttattctgttcacaacactcttcct |
13891113 |
T |
|
| Q |
329 |
tgccacagtcttaaccctcatctttcgtttatcgtttccttgcgctgtttccactgtttgattcaccttctcaaaaccttcat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13891112 |
tgccacagtcttaaccctcatctttcgtttatcgtttccttgcgctgtttccactgtttgattcaccttctcaaaaccttcat |
13891030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University