View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1065_low_4 (Length: 408)
Name: NF1065_low_4
Description: NF1065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1065_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 29 - 401
Target Start/End: Complemental strand, 35876016 - 35875641
Alignment:
| Q |
29 |
aataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaaaaatga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35876016 |
aataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaaaaatga |
35875917 |
T |
|
| Q |
129 |
aaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatctacagaag |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35875916 |
aaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatctacagaag |
35875817 |
T |
|
| Q |
229 |
tgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcc---ttggacggtatctgcatctctatctttggtaagtaggttttactaaactc |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35875816 |
tgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcccgattggacggtacctgcatctctatctttggtaagtaggttttactaaactc |
35875717 |
T |
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| Q |
326 |
ctcaggattcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcatctca |
401 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35875716 |
ctcaggactcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcatctca |
35875641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 29 - 401
Target Start/End: Complemental strand, 24450217 - 24449842
Alignment:
| Q |
29 |
aataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaaaaatga |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24450217 |
aataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaaaaatga |
24450118 |
T |
|
| Q |
129 |
aaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatctacagaag |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24450117 |
aaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatctacagaag |
24450018 |
T |
|
| Q |
229 |
tgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcc---ttggacggtatctgcatctctatctttggtaagtaggttttactaaactc |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24450017 |
tgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcccgattggacggtacctgcatctctatctttggtaagtaggttttactaaactc |
24449918 |
T |
|
| Q |
326 |
ctcaggattcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcatctca |
401 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24449917 |
ctcaggactcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcatctca |
24449842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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