View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1065_low_5 (Length: 373)

Name: NF1065_low_5
Description: NF1065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1065_low_5
NF1065_low_5
[»] chr6 (15 HSPs)
chr6 (14-260)||(2964355-2964598)
chr6 (14-265)||(2658980-2659228)
chr6 (14-340)||(2997377-2997700)
chr6 (14-266)||(3003767-3004004)
chr6 (14-340)||(2951717-2952028)
chr6 (14-266)||(2927009-2927246)
chr6 (14-266)||(2934448-2934688)
chr6 (168-340)||(2973788-2973960)
chr6 (14-88)||(2982881-2982952)
chr6 (169-225)||(2982762-2982818)
chr6 (14-50)||(2937513-2937549)
chr6 (298-340)||(2659264-2659306)
chr6 (302-340)||(2982647-2982685)
chr6 (302-340)||(3004046-3004084)
chr6 (14-89)||(2974024-2974096)
[»] scaffold0024 (2 HSPs)
scaffold0024 (154-261)||(35344-35451)
scaffold0024 (302-340)||(35489-35527)
[»] chr3 (3 HSPs)
chr3 (18-225)||(49613323-49613527)
chr3 (168-223)||(49618306-49618361)
chr3 (14-88)||(49618436-49618507)
[»] chr7 (2 HSPs)
chr7 (193-232)||(3339052-3339091)
chr7 (302-340)||(3338956-3338994)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 2964598 - 2964355
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattgtgataaccaaaatagtgaataacg 113  Q
    |||||||||||||||||||||||||||  ||||||||   |||||||| |||||||||  ||||||||||||||||| |||| ||||||| | | ||  |    
T  2964598 aaatatcctaatcagatcagtgaagtgccttatacta---atatcacccttatcaaaatccaattttgatttattgtaataatcaaaataatcagtagtg 2964502  T
Q  114 agtacaagaaaaggacggatcctagtgttaggattactagcatttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagctgat 213  Q
    |||  |||||||| | ||||  |||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  2964501 agtttaagaaaagaagggatgttagtgttaggaacactagcatttgtagaactcaatgaaagactgtaaattttttcaataacgaaatagggaagctgat 2964402  T
Q  214 tttcaagtaacattaaatcgtatcttataacatcatctaaccaaggt 260  Q
    |||||||||||||||||||  |||||||| || ||| ||||||||||    
T  2964401 tttcaagtaacattaaatctgatcttataccaacatataaccaaggt 2964355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 2658980 - 2659228
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattgtgataaccaaaatagtgaataacg 113  Q
    ||||||||||||||||||||||||||| |||||||||   |||||||||||||||||| |||| ||||||||||||  | ||  |||||| | ||||  |    
T  2658980 aaatatcctaatcagatcagtgaagtgcattatacta---atatcaccattatcaaaaaacaagtttgatttattggaagaataaaaatatttaatagtg 2659076  T
Q  114 agtacaagaaaaggacggatcctagtgttaggattactagcatttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagctgat 213  Q
    ||| ||||||||  | ||||| |||| ||||||  ||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||    
T  2659077 agttcaagaaaaccagggatcgtagtcttaggaacactagcatttgtagaactcgatgaaagtttgtaaatttcttcaataacgaaaaagggaagctgat 2659176  T
Q  214 tttcaagtaacattaaatcgtatcttataacatcatctaaccaaggtttaaa 265  Q
    |||||||||||| ||||||  ||  |||| ||||||||||||||||||||||    
T  2659177 tttcaagtaacaataaatctaatgctataccatcatctaaccaaggtttaaa 2659228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 2997377 - 2997700
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattgtgataaccaaaatagtgaataacg 113  Q
    |||||||||||||||||||||||||||  ||||||||   |||||||||| ||||||| |||| ||||||||||||  | ||   ||| | | ||||  |    
T  2997377 aaatatcctaatcagatcagtgaagtgccttatacta---atatcaccatcatcaaaaaacaagtttgatttattgaaagaaaagaaaaaattaatagtg 2997473  T
Q  114 agtacaagaaaaggacggatcctagtgttaggattactagcatttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagctgat 213  Q
    ||| ||||||||  | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  2997474 agttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgat 2997573  T
Q  214 tttcaagtaacattaaatcgtatcttataacatcatctaaccaaggtttaaagcgatcccctccaaagatggatctnnnnnnnngttcaattataaaaat 313  Q
    ||||||||||||||||||    | ||||| ||||||| |||||| ||| ||||  |  ||| ||| ||  | ||||        ||||||||||||||      
T  2997574 tttcaagtaacattaaatttgttgttataccatcatcgaaccaaagttcaaagacaaacccaccatagtggtatctcaagaaaagttcaattataaaacc 2997673  T
Q  314 ggaatcgattaagattaacttaacaag 340  Q
    |||||||||||||||||||||||||||    
T  2997674 ggaatcgattaagattaacttaacaag 2997700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 3003767 - 3004004
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattgtgataaccaaaatagtgaataacg 113  Q
    |||||||||||||||||||||||||||| ||||||||   |||||||| |||||||||  ||||||||||||||||| |||||||||||| ||||||  |    
T  3003767 aaatatcctaatcagatcagtgaagtgacttatacta---atatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtg 3003863  T
Q  114 agtacaagaaaaggacggatcctagtgttaggattactagcatttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagctgat 213  Q
    |||  |||||||| | ||||| ||||| |||||  | |||            | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  3003864 agtttaagaaaagaatggatcatagtggtaggaacattag------------tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgat 3003951  T
Q  214 tttcaagtaacattaaatcgtatcttataacatcatctaaccaaggtttaaag 266  Q
    |||||||||||  |||||||| ||||||| ||| |||||||||||||||||||    
T  3003952 tttcaagtaaccataaatcgtttcttataccattatctaaccaaggtttaaag 3004004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 340
Target Start/End: Complemental strand, 2952028 - 2951717
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattgtgataaccaaaatagtgaataacg 113  Q
    |||||||||||||||||||||||||||  ||||||||   |||||||| |||||||||  ||||||||||||||||| |||||||||||| ||||||  |    
T  2952028 aaatatcctaatcagatcagtgaagtgccttatacta---atatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtg 2951932  T
Q  114 agtacaagaaaaggacggatcctagtgttaggattactagcatttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagctgat 213  Q
    |||  |||||||| | ||||| ||||| |||||  | |||            | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  2951931 agtttaagaaaagaatggatcatagtgataggaacattag------------tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgat 2951844  T
Q  214 tttcaagtaacattaaatcgtatcttataacatcatctaaccaaggtttaaagcgatcccctccaaagatggatctnnnnnnnngttcaattataaaaat 313  Q
    |||||||||||  |||||||| | ||||| ||  | ||||||||||||||||| | |||||| || |   |||| |        ||| ||||||||||      
T  2951843 tttcaagtaaccataaatcgtgtattataccagtacctaaccaaggtttaaagagctccccttcataacaggatgtccaaaaaagttgaattataaaagc 2951744  T
Q  314 ggaatcgattaagattaacttaacaag 340  Q
    |||||||||||||||||||||||||||    
T  2951743 ggaatcgattaagattaacttaacaag 2951717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 2927246 - 2927009
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattgtgataaccaaaatagtgaataacg 113  Q
    |||||||| ||||||||||||||||||  ||||| ||   |||||||| |||||||||  ||||||||||||||||| |||||||||||| ||||||  |    
T  2927246 aaatatccgaatcagatcagtgaagtgccttataata---atatcacccttatcaaaattcaattttgatttattgtaataaccaaaataatgaatagtg 2927150  T
Q  114 agtacaagaaaaggacggatcctagtgttaggattactagcatttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagctgat 213  Q
    |||  |||||||| | ||||| ||||| |||||  | |||            | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  2927149 agtttaagaaaagaatggatcatagtggtaggaacattag------------tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgat 2927062  T
Q  214 tttcaagtaacattaaatcgtatcttataacatcatctaaccaaggtttaaag 266  Q
    |||||||||||  |||||||| ||||||| ||| |||||||||||||||||||    
T  2927061 tttcaagtaaccataaatcgtgtcttataccattatctaaccaaggtttaaag 2927009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 2934688 - 2934448
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattgtgataaccaaaatagtgaataacg 113  Q
    |||||||||||||||||||||||||||  ||||||||   |||||||| |||||||||  ||||||||||||||||| |||||||||||| ||||||  |    
T  2934688 aaatatcctaatcagatcagtgaagtgccttatacta---atatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtg 2934592  T
Q  114 agtacaagaaaaggac---ggatcctagtgttaggattactagcatttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagct 210  Q
    |||  |||||||| |    | ||| ||||||| |||| | |||            | ||||||||| |||||||||||||||||||||||||||||||||    
T  2934591 agtctaagaaaagaatattgtatcatagtgttgggatcattag------------tcaatgaaagactgtaaattttttcaataacgaaaaagggaagct 2934504  T
Q  211 gattttcaagtaacattaaatcgtatcttataacatcatctaaccaaggtttaaag 266  Q
    |||||||||||||||||||||||| | ||||| ||  ||||||| |||||||||||    
T  2934503 gattttcaagtaacattaaatcgtctgttataccagtatctaacaaaggtttaaag 2934448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 2973960 - 2973788
Alignment:
Q  168 aatgaaagattgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtatcttataacatcatctaaccaaggtttaaagc 267  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||  |||| ||| || |||||||||||| |||     
T  2973960 aatgaaatactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatgatatatcattatataaccaaggttttaaga 2973861  T
Q  268 gatcccctccaaagatggatctnnnnnnnngttcaattataaaaatggaatcgattaagattaacttaacaag 340  Q
    |||| ||| || |   ||||||        ||||||||||||||  |||||| ||||| ||||||||||||||    
T  2973860 gatcaccttcacaacaggatctcaataaatgttcaattataaaaccggaatccattaaaattaacttaacaag 2973788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 2982952 - 2982881
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttatt 88  Q
    |||||||||||||||||||||||||||  ||||||||   |||||||||||||||||||||||||||||||||||    
T  2982952 aaatatcctaatcagatcagtgaagtgccttatacta---atatcaccattatcaaaagacaattttgatttatt 2982881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 2982818 - 2982762
Alignment:
Q  169 atgaaagattgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 225  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2982818 atgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 2982762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 2937549 - 2937513
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatacta 50  Q
    |||||||||||||||||||||||||||| ||||||||    
T  2937549 aaatatcctaatcagatcagtgaagtgacttatacta 2937513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 2659264 - 2659306
Alignment:
Q  298 gttcaattataaaaatggaatcgattaagattaacttaacaag 340  Q
    ||| ||||||||||  |||||||||||||||||||||||||||    
T  2659264 gttgaattataaaacaggaatcgattaagattaacttaacaag 2659306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 2982685 - 2982647
Alignment:
Q  302 aattataaaaatggaatcgattaagattaacttaacaag 340  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  2982685 aattataaaagcggaatcgattaagattaacttaacaag 2982647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 3004046 - 3004084
Alignment:
Q  302 aattataaaaatggaatcgattaagattaacttaacaag 340  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  3004046 aattataaaagcggaatcgattaagattaacttaacaag 3004084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 2974096 - 2974024
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattg 89  Q
    ||||||||||||||||||| ||||||| |||||||   ||||||||   |||||||||  |||||||| |||||||    
T  2974096 aaatatcctaatcagatcattgaagtgcattatac---taatatcattgttatcaaaacccaattttggtttattg 2974024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 35344 - 35451
Alignment:
Q  154 catttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtatcttataacatcatctaa 253  Q
    |||||||||||||  | ||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||| || |||||||    
T  35344 catttgtagaactccacgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatcttataccagcatctaa 35443  T
Q  254 ccaaggtt 261  Q
    ||||||||    
T  35444 ccaaggtt 35451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 35489 - 35527
Alignment:
Q  302 aattataaaaatggaatcgattaagattaacttaacaag 340  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  35489 aattataaaaccggaatcgattaagattaacttaacaag 35527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 49613527 - 49613323
Alignment:
Q  18 atcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttattgtgataaccaaaatagtgaataacgagta 117  Q
    |||||||||||||||||||||||  ||||||||   | ||| ||||||||||||  ||| ||||||| ||||| |||  ||||||| | || |   |||     
T  49613527 atcctaatcagatcagtgaagtgccttatacta---aaatcgccattatcaaaacccaagtttgattgattgtaatatgcaaaataatcaaaactaagtt 49613431  T
Q  118 caagaaaaggacggatcctagtgttaggattactagcatttgtagaactgaatgaaagattgtaaattttttcaataacgaaaaagggaagctgattttc 217  Q
    ||||||||| | ||||  |||| || |||  |||||| || |||||| | ||||||||||||||||||| || |||||| ||||| || |  ||||||||    
T  49613430 caagaaaagaagggattttagtcttgggaacactagcgttagtagaagtaaatgaaagattgtaaatttcttgaataacaaaaaatggcaattgattttc 49613331  T
Q  218 aagtaaca 225  Q
    ||||||||    
T  49613330 aagtaaca 49613323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 49618361 - 49618306
Alignment:
Q  168 aatgaaagattgtaaattttttcaataacgaaaaagggaagctgattttcaagtaa 223  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  49618361 aatgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaa 49618306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 49618507 - 49618436
Alignment:
Q  14 aaatatcctaatcagatcagtgaagtgaattatactagtaatatcaccattatcaaaagacaattttgatttatt 88  Q
    |||||||||||||||||||||||||||  ||||||   |||||||||| | |||||||  |||||||||||||||    
T  49618507 aaatatcctaatcagatcagtgaagtgccttatac---taatatcaccgtcatcaaaatccaattttgatttatt 49618436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 3339091 - 3339052
Alignment:
Q  193 taacgaaaaagggaagctgattttcaagtaacattaaatc 232  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3339091 taacgaaaaagggaagctgattttcaagtaacaataaatc 3339052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 3338994 - 3338956
Alignment:
Q  302 aattataaaaatggaatcgattaagattaacttaacaag 340  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  3338994 aattataaaaccggaatcgattaagattaacttaacaag 3338956  T

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