View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_high_11 (Length: 250)
Name: NF10660_high_11
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36123378 - 36123139
Alignment:
| Q |
1 |
caatagaaagaaaaa-taaaaataagacggtgtaagtatgagaaggaagattattataaaagttgtcacaaaattatttttcaaatatcannnnnnnnat |
99 |
Q |
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| T |
36123378 |
caatagaaagaaaaaataaaaataagacgatgtaagtatgagaaggaagattattataaaagttgtca-aaaattattttttaaatatcattttttttat |
36123280 |
T |
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| Q |
100 |
tcgaatggtgtatgattgttttttacgtaggtgtatgaattaaatgtagtagtgtagacagacacaatacagcgacagcacaaggatgcatatatacggt |
199 |
Q |
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| T |
36123279 |
tcgaatggtgtatgattgttttttacgtaggtgtatgaattgaatgtagtagtgtagacaggcacaatacagcgacagcacaaggatgcatatatacggt |
36123180 |
T |
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| Q |
200 |
gcaacgttgctgtttggaggagggtcctattttgtcctttg |
240 |
Q |
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| T |
36123179 |
gcaacgttgctgtttggaggagggtcctattttgtcctttg |
36123139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 22491339 - 22491379
Alignment:
| Q |
49 |
attattataaaagttgtcacaaaattatttttcaaatatca |
89 |
Q |
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| T |
22491339 |
attattataaaagttgtcacaaaatgattgttcaaatatca |
22491379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 17367365 - 17367424
Alignment:
| Q |
30 |
tgtaagtatgagaaggaagattattataaaagttgtcacaaaattatttttcaaatatca |
89 |
Q |
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| T |
17367365 |
tgtaaatatgagaaagaaaattatcataaaagttgacacaaaataattgttcaaatatca |
17367424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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