View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10660_high_13 (Length: 243)

Name: NF10660_high_13
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10660_high_13
NF10660_high_13
[»] chr5 (5 HSPs)
chr5 (78-230)||(19653993-19654145)
chr5 (1-80)||(19653650-19653729)
chr5 (1-74)||(17392666-17392739)
chr5 (1-70)||(17377592-17377661)
chr5 (14-74)||(17383956-17384016)
[»] chr8 (1 HSPs)
chr8 (103-230)||(7234633-7234760)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 19653993 - 19654145
Alignment:
Q  78 caaagtcgaaggattcgaggccctatggtggacgagttcctgtagccaaaggggatcgatttgatggtggaagaactcaattggatgtggggtaaggaca 177  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  19653993 caaagtcgaaggattcaaggccccatggtggacgaattcctgtagccaaaggggaacgatttgatggtggaagaactcaattggatgtggggtaacgaca 19654092  T
Q  178 aggtggacctgcccatggttgttgtccccatggtccccattgtgggtatgatg 230  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||    
T  19654093 aggtggagctgcccatggtttttgtccccacggtccccattgtgggtatgatg 19654145  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19653650 - 19653729
Alignment:
Q  1 cataacttgtaagagtctcgcattcagcaaaatgtatgttcaaaatcgaaaatcagcttcagaagcttcatagttttcaa 80  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  19653650 cataacttgtaagagtctcgcattcagcaaaatgtatgttgaaaaaagaaaatcagcttcagaagcttcatagttttcaa 19653729  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 17392739 - 17392666
Alignment:
Q  1 cataacttgtaagagtctcgcattcagcaaaatgtatgttcaaaatcgaaaatcagcttcagaagcttcatagt 74  Q
    |||||||||||| |||||||||||| ||||||| ||||||   |||||||||||||||||  ||||||||||||    
T  17392739 cataacttgtaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagt 17392666  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17377661 - 17377592
Alignment:
Q  1 cataacttgtaagagtctcgcattcagcaaaatgtatgttcaaaatcgaaaatcagcttcagaagcttca 70  Q
    |||||||||||| |||||||||||  ||||||| ||||||   |||||||||||||||||  ||||||||    
T  17377661 cataacttgtaaaagtctcgcatttcgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttca 17377592  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 17384016 - 17383956
Alignment:
Q  14 agtctcgcattcagcaaaatgtatgttcaaaatcgaaaatcagcttcagaagcttcatagt 74  Q
    |||||||||||| ||||||| ||||||   |||||||||||||||||  ||||||||||||    
T  17384016 agtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcccaagcttcatagt 17383956  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 7234633 - 7234760
Alignment:
Q  103 tggtggacgagttcctgtagccaaaggggatcgatttgatggtggaagaactcaattggatgtggggtaaggacaaggtggacctgcccatggttgttgt 202  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  7234633 tggtggacgagttcctgtagccacgggggaacgatttgatggtggacgaacccaattggatgtggggtaaggacaaggtggagctgcccatggttgttgt 7234732  T
Q  203 ccccatggtccccattgtgggtatgatg 230  Q
    ||||| ||||||||||||||||||||||    
T  7234733 ccccacggtccccattgtgggtatgatg 7234760  T

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