View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_high_14 (Length: 241)
Name: NF10660_high_14
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_high_14 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 20845161 - 20845280
Alignment:
| Q |
122 |
ttgaagtataccatgctctgctgtcttcttcctatacaaacaagtgctttttggggaaaaacttgcagcataagaacgaaaatcatttgattctaatagt |
221 |
Q |
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| T |
20845161 |
ttgaagtatatcatgctctgctgtcttcttcctatacaaacaagtgctttttggggaaaaacttgcagcataagaacgaaaatcatttgattctaatagt |
20845260 |
T |
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| Q |
222 |
tttaatatattgtggatatc |
241 |
Q |
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| T |
20845261 |
tttaatatattgtggatatc |
20845280 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 20864009 - 20864091
Alignment:
| Q |
62 |
ttcagagtccaggaattgaatagattgcaatcagcatcataaaaaatggtttgatatcttttgaagtataccatgctctgctg |
144 |
Q |
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| T |
20864009 |
ttcagagtccaggagttgaatagattgtaatcaacatcataaaaaatggattgatatcttgtgaagtatatcatgctctgctg |
20864091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 25088375 - 25088241
Alignment:
| Q |
84 |
gattgcaatcagcatcataaaaaatggtttgatatcttttgaagtataccatgctctgctgtcttcttcctatacaaacaagtgctttttg----gggaa |
179 |
Q |
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| T |
25088375 |
gattgtaatcagcatcagaaaaaatgaattgatatcttgtgaagtatgacatgctctgctgccctcatcctataccaacaagtgcttttttttttggaaa |
25088276 |
T |
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| Q |
180 |
aaacttgcagcataagaacgaaaatcatttgattc |
214 |
Q |
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| T |
25088275 |
caacttgcagcataagaacgaaaaacatttgattc |
25088241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 20865515 - 20865548
Alignment:
| Q |
181 |
aacttgcagcataagaacgaaaatcatttgattc |
214 |
Q |
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| T |
20865515 |
aacttgcagcataagaacaaaaatcatttgattc |
20865548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 15466740 - 15466892
Alignment:
| Q |
62 |
ttcagagtccaggaattgaatagattgcaatcagcatcataaaaaatggtttgatatcttttgaagtataccatgctctgctgtcttcttcctatacaaa |
161 |
Q |
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| T |
15466740 |
ttcagagtccaggagccgaatagattgtaatcagcattagaaaaaatggtttgatatcttctgaagtatatcgagctctgctgccctcatcatatacaaa |
15466839 |
T |
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| Q |
162 |
caagtgctttttggggaaaaacttgcagcataagaacgaaaatcatttgattc |
214 |
Q |
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| T |
15466840 |
caagtgcttcttggggaacaacttgcagcataagaacgaaaatcatttgattc |
15466892 |
T |
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