View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10660_high_15 (Length: 239)

Name: NF10660_high_15
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10660_high_15
NF10660_high_15
[»] chr4 (26 HSPs)
chr4 (1-61)||(145456-145516)
chr4 (142-211)||(6271689-6271758)
chr4 (142-208)||(23444351-23444417)
chr4 (142-207)||(51265436-51265501)
chr4 (142-206)||(30861856-30861920)
chr4 (74-124)||(145604-145654)
chr4 (142-196)||(3862628-3862682)
chr4 (142-196)||(3871385-3871439)
chr4 (142-199)||(6271784-6271841)
chr4 (142-199)||(42375092-42375149)
chr4 (144-199)||(5048884-5048939)
chr4 (142-201)||(47661924-47661983)
chr4 (142-199)||(26186096-26186153)
chr4 (150-199)||(35682165-35682214)
chr4 (142-201)||(23444266-23444325)
chr4 (142-184)||(25818387-25818429)
chr4 (152-201)||(19184500-19184549)
chr4 (150-199)||(30709990-30710039)
chr4 (142-209)||(47404667-47404725)
chr4 (172-206)||(38714824-38714858)
chr4 (142-208)||(42375009-42375066)
chr4 (142-184)||(47661856-47661898)
chr4 (141-202)||(47762604-47762665)
chr4 (142-199)||(51265527-51265584)
chr4 (142-195)||(53954692-53954745)
chr4 (172-208)||(31430561-31430597)
[»] chr7 (17 HSPs)
chr7 (141-210)||(34854776-34854845)
chr7 (142-206)||(4290537-4290601)
chr7 (142-210)||(38975793-38975861)
chr7 (142-208)||(11016859-11016925)
chr7 (142-210)||(41018310-41018378)
chr7 (142-208)||(48000684-48000750)
chr7 (150-206)||(45231940-45231996)
chr7 (141-196)||(27028874-27028929)
chr7 (140-199)||(48000817-48000876)
chr7 (141-199)||(11016950-11017008)
chr7 (143-199)||(4290628-4290684)
chr7 (141-211)||(15027529-15027599)
chr7 (150-199)||(42628385-42628434)
chr7 (142-196)||(27028730-27028784)
chr7 (142-196)||(38975887-38975941)
chr7 (171-205)||(42628297-42628331)
chr7 (172-208)||(29053417-29053453)
[»] chr5 (29 HSPs)
chr5 (141-210)||(19655146-19655215)
chr5 (142-208)||(291087-291153)
chr5 (142-208)||(19598322-19598388)
chr5 (142-199)||(29699449-29699506)
chr5 (142-202)||(28818999-28819059)
chr5 (142-208)||(30117910-30117976)
chr5 (150-199)||(2093936-2093985)
chr5 (142-199)||(2953272-2953329)
chr5 (141-199)||(291178-291236)
chr5 (150-204)||(12913893-12913947)
chr5 (142-196)||(13312266-13312320)
chr5 (142-199)||(16439137-16439194)
chr5 (142-199)||(16971226-16971283)
chr5 (142-199)||(3899921-3899978)
chr5 (142-199)||(19655240-19655297)
chr5 (143-195)||(26662482-26662535)
chr5 (143-195)||(26934077-26934130)
chr5 (143-199)||(11983255-11983310)
chr5 (141-201)||(30117825-30117885)
chr5 (150-201)||(228440-228491)
chr5 (141-196)||(1638459-1638514)
chr5 (142-192)||(3180142-3180191)
chr5 (142-184)||(29699381-29699423)
chr5 (151-184)||(17849236-17849269)
chr5 (142-195)||(32485631-32485684)
chr5 (172-208)||(2953197-2953233)
chr5 (143-195)||(12913806-12913858)
chr5 (151-199)||(22082997-22083045)
chr5 (163-199)||(39777050-39777086)
[»] chr1 (25 HSPs)
chr1 (142-210)||(29179679-29179747)
chr1 (141-208)||(46931987-46932054)
chr1 (142-208)||(44706866-44706932)
chr1 (142-212)||(37155032-37155102)
chr1 (142-208)||(48993999-48994065)
chr1 (141-210)||(48498403-48498472)
chr1 (141-199)||(1091625-1091683)
chr1 (142-208)||(5995359-5995425)
chr1 (142-199)||(5995451-5995508)
chr1 (142-199)||(48993916-48993973)
chr1 (142-201)||(15220893-15220952)
chr1 (172-210)||(34062206-34062244)
chr1 (141-199)||(46932063-46932120)
chr1 (150-199)||(31342262-31342311)
chr1 (150-199)||(49444912-49444961)
chr1 (171-211)||(8337953-8337993)
chr1 (143-199)||(36290490-36290546)
chr1 (142-201)||(28395634-28395693)
chr1 (142-195)||(9157313-9157366)
chr1 (142-195)||(21630045-21630098)
chr1 (142-199)||(29179596-29179653)
chr1 (142-191)||(32540755-32540804)
chr1 (150-199)||(33219663-33219712)
chr1 (172-209)||(49445014-49445051)
chr1 (172-208)||(38674504-38674540)
[»] chr3 (17 HSPs)
chr3 (141-208)||(41752954-41753021)
chr3 (142-208)||(43139791-43139857)
chr3 (142-199)||(1801445-1801502)
chr3 (142-210)||(51046155-51046223)
chr3 (142-195)||(33689179-33689232)
chr3 (142-199)||(41753046-41753103)
chr3 (144-192)||(18321657-18321705)
chr3 (142-208)||(47492129-47492195)
chr3 (142-199)||(45103108-45103165)
chr3 (141-201)||(51046070-51046130)
chr3 (150-199)||(30734492-30734541)
chr3 (145-194)||(30580841-30580890)
chr3 (142-195)||(30734405-30734458)
chr3 (141-194)||(50524706-50524759)
chr3 (150-199)||(50524792-50524841)
chr3 (172-208)||(1801598-1801634)
chr3 (151-195)||(55223235-55223279)
[»] chr8 (18 HSPs)
chr8 (142-208)||(8243470-8243536)
chr8 (142-207)||(35441051-35441116)
chr8 (142-209)||(5033150-5033217)
chr8 (142-208)||(2581815-2581881)
chr8 (142-210)||(22649833-22649901)
chr8 (142-208)||(33841673-33841739)
chr8 (142-199)||(5667096-5667153)
chr8 (142-199)||(45191126-45191183)
chr8 (141-207)||(10086748-10086814)
chr8 (142-199)||(5033243-5033300)
chr8 (142-199)||(8796421-8796478)
chr8 (150-201)||(43844468-43844519)
chr8 (141-194)||(10086838-10086891)
chr8 (142-199)||(33841590-33841647)
chr8 (142-199)||(35440968-35441025)
chr8 (142-199)||(43844551-43844608)
chr8 (141-205)||(45191208-45191272)
chr8 (150-208)||(5667187-5667245)
[»] chr6 (10 HSPs)
chr6 (142-208)||(551247-551313)
chr6 (142-208)||(24975742-24975808)
chr6 (142-195)||(17750984-17751037)
chr6 (142-196)||(24587463-24587517)
chr6 (142-201)||(13043539-13043598)
chr6 (142-192)||(12343182-12343232)
chr6 (150-195)||(24618604-24618649)
chr6 (162-208)||(13043438-13043484)
chr6 (141-195)||(17750906-17750959)
chr6 (141-170)||(551193-551222)
[»] chr2 (18 HSPs)
chr2 (142-208)||(29508773-29508839)
chr2 (142-208)||(9173063-9173129)
chr2 (142-199)||(6217223-6217280)
chr2 (142-210)||(16514412-16514480)
chr2 (142-196)||(14229355-14229409)
chr2 (142-199)||(16514506-16514563)
chr2 (142-199)||(37961788-37961845)
chr2 (142-194)||(33018627-33018679)
chr2 (150-201)||(14892350-14892401)
chr2 (142-199)||(38933669-38933726)
chr2 (142-196)||(29508692-29508747)
chr2 (152-195)||(45213892-45213935)
chr2 (141-199)||(6722032-6722090)
chr2 (150-195)||(14470595-14470640)
chr2 (142-199)||(32545870-32545927)
chr2 (172-208)||(6217327-6217363)
chr2 (144-196)||(32545788-32545840)
chr2 (164-208)||(37632981-37633025)
[»] scaffold0161 (2 HSPs)
scaffold0161 (142-208)||(27302-27368)
scaffold0161 (150-199)||(27219-27268)
[»] scaffold0016 (1 HSPs)
scaffold0016 (142-199)||(49702-49759)
[»] scaffold0180 (1 HSPs)
scaffold0180 (142-201)||(19119-19178)
[»] scaffold0586 (2 HSPs)
scaffold0586 (142-195)||(7050-7103)
scaffold0586 (142-195)||(7129-7181)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 145456 - 145516
Alignment:
Q  1 tatttgcaaaatacttaccattaaaagaataattatatatacaataaaattctatttgcaa 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  145456 tatttgcaaaatacttaccattaaaagaataattatatatacaataaaattctatttgcaa 145516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 6271758 - 6271689
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgtc 211  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  6271758 cattgtggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtattttccgtc 6271689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 23444351 - 23444417
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  23444351 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttcc 23444417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 51265501 - 51265436
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttc 207  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||    
T  51265501 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 51265436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 30861856 - 30861920
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatatttt 206  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||    
T  30861856 cattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagtatttt 30861920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 145604 - 145654
Alignment:
Q  74 taaaagagcatttattgattgagtattaatgatatgatctagtctaagtac 124  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  145604 taaaagagcatttattgattaagtattaatgatatgatctagtctatgtac 145654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 3862628 - 3862682
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  3862628 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacc 3862682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 3871385 - 3871439
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  3871385 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacc 3871439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 6271784 - 6271841
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  6271784 cattgtgacattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaa 6271841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 42375092 - 42375149
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  42375092 cattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaa 42375149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 5048884 - 5048939
Alignment:
Q  144 ttgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||    
T  5048884 ttgtgacattatgattgaccaatgtcatcaatgtcacccaactctatgtcatccaa 5048939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 47661924 - 47661983
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||||||||||||||||||    
T  47661924 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaat 47661983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 26186096 - 26186153
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||  |||||||||| |||||||||||||| | |||||||||||||||||||||    
T  26186096 cattgtgaaattgtgattggccaatgtcatcaatgttacccaactctatgtcacccaa 26186153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 35682214 - 35682165
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  35682214 cattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaa 35682165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 23444325 - 23444266
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||||||||| ||||||||    
T  23444325 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaaat 23444266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 25818429 - 25818387
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaa 184  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  25818429 cattgtgacattgtgattgaccaatgtcatcaatgtcacccaa 25818387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 19184549 - 19184500
Alignment:
Q  152 ttgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    |||||||||||||||||||||||| ||||  |||||||| ||||||||||    
T  19184549 ttgtgattgaccaatgtcatcaatgtcacttaactctatctcacccaaat 19184500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 30709990 - 30710039
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||| ||||||||| |||| ||||| |||||||||||||||||    
T  30709990 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 30710039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 47404667 - 47404725
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccg 209  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||| |||||||||    
T  47404667 cattgtggcattgtgattgaccaatgtca---------cccaactctatgtcacccaagtattttccg 47404725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 38714858 - 38714824
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatatttt 206  Q
    |||||||||| ||||||||||||||||||||||||    
T  38714858 caatatcacctaactctatgtcacccaaatatttt 38714824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 42375066 - 42375009
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||| ||||||||    
T  42375066 cattgtggcattgtgattgaccaatgtca---------cccaactctatgtcacccaagtattttcc 42375009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 47661898 - 47661856
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaa 184  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||    
T  47661898 cattgtggcattgtgattggccaatgtcaccaatgtcacccaa 47661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 47762665 - 47762604
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaata 202  Q
    |||||||  |||||||||||  ||||||||  |||||||| || ||||||||||||||||||    
T  47762665 acattgtaacattgtgattggtcaatgtcacaaatatcactcagctctatgtcacccaaata 47762604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 51265527 - 51265584
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||| ||||||  |||||||| |||| ||||||||||||| |||||||||    
T  51265527 cattgtgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaa 51265584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 53954692 - 53954745
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    ||||||| |||||| ||||  |||||||| |||| |||||||||||||||||||    
T  53954692 cattgtgacattgtaattggacaatgtcaccaatgtcacccaactctatgtcac 53954745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 31430561 - 31430597
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  31430561 caatgtcacccaactctatgtcacccaagtattttcc 31430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 34854776 - 34854845
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  34854776 acattgtggcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcacccaagtattttccgt 34854845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 4290601 - 4290537
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatatttt 206  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  4290601 cattgtggcattgtgattgaccaatatcaccaatatcacccaactctatgtcacccaagtatttt 4290537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 38975861 - 38975793
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||||||    
T  38975861 cattgtggcattgtgattgaccaatgttaccaatgtcacccaactctatgtcacccaagtattttccgt 38975793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 11016925 - 11016859
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  11016925 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 11016859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 41018310 - 41018378
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    |||||||||||||||||||  |||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  41018310 cattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttccgt 41018378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 48000750 - 48000684
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||||| ||||||||    
T  48000750 cattgtggcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagtattttcc 48000684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 45231940 - 45231996
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatatttt 206  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||    
T  45231940 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 45231996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 27028874 - 27028929
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  27028874 acattgtgacattgtgattgaccaatgtcaccaacatcacccaagtctatgtcacc 27028929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 48000817 - 48000876
Alignment:
Q  140 gacattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||||||||||||||||  |||||||| |||| |||||||||||||||| ||||||    
T  48000817 gacattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaa 48000876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 11016950 - 11017008
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||| |||||||||||  |||||||| |||| |||||||||||||||||||||||    
T  11016950 acattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 11017008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 4290628 - 4290684
Alignment:
Q  143 attgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||| ||||||||||| ||||||||| |||| |||||||||| ||||||||||||    
T  4290628 attgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaa 4290684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 15027599 - 15027529
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgtc 211  Q
    ||||||||| ||||||||||  |||||||| |||| |||  ||||||||||| |||||| |||||||||||    
T  15027599 acattgtggtattgtgattggtcaatgtcaccaatgtcaaacaactctatgttacccaagtattttccgtc 15027529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 42628385 - 42628434
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||| ||||| ||| |||| |||||||||||||||||||||||    
T  42628385 cattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaa 42628434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 27028784 - 27028730
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    ||||||| ||||||||||| ||||||||| |||| |||| ||||| |||||||||    
T  27028784 cattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcacc 27028730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 38975887 - 38975941
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    |||||||||||| | ||||| |||||||| |||| ||||| ||||||||||||||    
T  38975887 cattgtggcattataattgatcaatgtcaccaatgtcacctaactctatgtcacc 38975941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 42628331 - 42628297
Alignment:
Q  171 tcaatatcacccaactctatgtcacccaaatattt 205  Q
    ||||| |||||||||||||||||||||||||||||    
T  42628331 tcaatgtcacccaactctatgtcacccaaatattt 42628297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 29053417 - 29053453
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  29053417 caatgtcacccaactctatgtcacccaagtattttcc 29053453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 19655215 - 19655146
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  19655215 acattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttccgt 19655146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 291153 - 291087
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||| ||||||||    
T  291153 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaagtattttcc 291087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 19598388 - 19598322
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||| |||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||    
T  19598388 cattgtggtattgtgattgaccaatgtcaccaatgttacccaactctatgtcacccaagtattttcc 19598322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 29699449 - 29699506
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  29699449 cattgtgacattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaa 29699506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 28818999 - 28819059
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaata 202  Q
    ||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28818999 cattgtgacattatgattgaccaatgtcaccaatatcactcaactctatgtcacccaaata 28819059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 30117910 - 30117976
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||| |||||||||||| ||| |||| ||| |||||||||||||| |||||||||||||    
T  30117910 cattgtggcattatgattgaccaatatcaccaatgtcatccaactctatgtcatccaaatattttcc 30117976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 2093985 - 2093936
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  2093985 cattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 2093936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 2953272 - 2953329
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||    
T  2953272 cattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaa 2953329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 291178 - 291236
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||| |||||||||||| |||||||| |||| |||||||||||||| ||||||||    
T  291178 acattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaa 291236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 12913893 - 12913947
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatatt 204  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||    
T  12913893 cattgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaaatatt 12913947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 13312320 - 13312266
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    ||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  13312320 cattgtgacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacc 13312266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 16439194 - 16439137
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||| ||| ||||    
T  16439194 cattgtgacattgtgattgaccaatgtcaccaatattacccaactctatatcatccaa 16439137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 16971226 - 16971283
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||||||||||||||||    
T  16971226 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 16971283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 3899921 - 3899978
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  |||||||| |||| ||||||||||||| |||||||||    
T  3899921 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaa 3899978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 19655240 - 19655297
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  |||||||| |||| |||| ||||||||||||||||||    
T  19655240 cattgtgacattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaa 19655297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 26662482 - 26662535
Alignment:
Q  143 attgtggcattgtgatt-gaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||| |||||    
T  26662482 attgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcac 26662535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 26934077 - 26934130
Alignment:
Q  143 attgtggcattgtgatt-gaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||| |||||    
T  26934077 attgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcac 26934130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 11983310 - 11983255
Alignment:
Q  143 attgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||| |||| |||||||||||||||| |||||||| |||| ||||||||||||||    
T  11983310 attgtgacattttgattgaccaatgtcaccaatatca-ccaattctatgtcacccaa 11983255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 30117885 - 30117825
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    |||||||| |||||||||||  |||| ||| |||| |||||||||||||| ||||||||||    
T  30117885 acattgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaaat 30117825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 228440 - 228491
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    ||||||||||||| ||| |||||||||| |||||||| ||||||| ||||||    
T  228440 cattgtgattgacaaatctcatcaatattacccaactttatgtcatccaaat 228491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 1638514 - 1638459
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    |||||||| ||||||||||| ||||| |||  |||||||||||||||||| |||||    
T  1638514 acattgtgacattgtgattggccaatatcacaaatatcacccaactctatatcacc 1638459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 3180142 - 3180191
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgt 192  Q
    ||||||||||||||||||||||||||||| |||| | | ||||||||||||    
T  3180142 cattgtggcattgtgattgaccaatgtcaccaatgtta-ccaactctatgt 3180191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 29699423 - 29699381
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaa 184  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||    
T  29699423 cattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 17849236 - 17849269
Alignment:
Q  151 attgtgattgaccaatgtcatcaatatcacccaa 184  Q
    |||||||||||||||||||| |||||||||||||    
T  17849236 attgtgattgaccaatgtcaccaatatcacccaa 17849269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 32485631 - 32485684
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||||  ||||||||||| |||||||| |||| |||||||||||| ||||||    
T  32485631 cattgtgatattgtgattgatcaatgtcaccaatgtcacccaactctgtgtcac 32485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 2953233 - 2953197
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  2953233 caatgtcacccaactctatgtcacccaagtattttcc 2953197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 12913858 - 12913806
Alignment:
Q  143 attgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||| ||||||||||| ||||||||| |||| |||| ||||| ||||||||    
T  12913858 attgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcac 12913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 22083045 - 22082997
Alignment:
Q  151 attgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||  ||||||||| ||| |||| ||||||||||||||||||    
T  22083045 attgtgattggtcaatgtcattaatgtcacacaactctatgtcacccaa 22082997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 39777086 - 39777050
Alignment:
Q  163 caatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||| |||| |||||||||||||||||||||||    
T  39777086 caatgtcaccaatgtcacccaactctatgtcacccaa 39777050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 29179679 - 29179747
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  29179679 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttccgt 29179747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 46932054 - 46931987
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  46932054 acattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 46931987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 44706866 - 44706932
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  44706866 cattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttcc 44706932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 37155102 - 37155032
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgtct 212  Q
    ||||||| ||||||||||| ||||||||| |||| ||||| ||||||||||||||||| ||||||||||||    
T  37155102 cattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagtattttccgtct 37155032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 48993999 - 48994065
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||||||||||  |||||||| |||| ||||||||||||||||||||||| ||||||||    
T  48993999 cattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 48994065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 48498472 - 48498403
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    ||||||||| ||| ||||||||||||||||  ||| ||||||||||||||||||||||| ||||||||||    
T  48498472 acattgtggtattatgattgaccaatgtcacaaatgtcacccaactctatgtcacccaagtattttccgt 48498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 1091625 - 1091683
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||| |||||||||||  ||| |||| ||||||||||||||||||||||||||||    
T  1091625 acattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcacccaa 1091683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 5995425 - 5995359
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||| ||||||| | |||| ||| | ||||||||||||||||| ||||||||    
T  5995425 cattgtggcattgtgattggccaatgttaccaatgtcatcaaactctatgtcacccaagtattttcc 5995359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 5995451 - 5995508
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||||||||||||||  |||||||| |||| ||| |||||||||||||||||||    
T  5995451 cattgtggcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaa 5995508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 48993973 - 48993916
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||||||||||||||||    
T  48993973 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 48993916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 15220893 - 15220952
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    |||||||  |||||||||| ||||| ||| |||| |||||||||||||||||||||||||    
T  15220893 cattgtgagattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaaat 15220952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 34062244 - 34062206
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatattttccgt 210  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  34062244 caatgtcacccaactctatgtcacccaaatattttccgt 34062206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 46932063 - 46932120
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||||||||||||  |||||||| |||| ||| |||||||||||||||||||    
T  46932063 acattgtggcattgtgattggtcaatgtcaccaatgtca-ccaactctatgtcacccaa 46932120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 31342311 - 31342262
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||| |||||||||||  | |||||||||||||||||||||||    
T  31342311 cattgtgattggccaatgtcatcggtgtcacccaactctatgtcacccaa 31342262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 49444961 - 49444912
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||||||| | |||||| |||| |||||||||||||||||||||||    
T  49444961 cattgtgattgatcgatgtcaccaatgtcacccaactctatgtcacccaa 49444912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 8337953 - 8337993
Alignment:
Q  171 tcaatatcacccaactctatgtcacccaaatattttccgtc 211  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  8337953 tcaatgtcacccaactctatgtcacccaagtattttccgtc 8337993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 36290490 - 36290546
Alignment:
Q  143 attgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||| |||||||||||  ||||| || |||| |||||||||||||||||||||||    
T  36290490 attgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaa 36290546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 28395693 - 28395634
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    ||||||| |||||||||||  |||||||| |||| |||| ||||||||||| ||||||||    
T  28395693 cattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaaat 28395634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 9157366 - 9157313
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    ||||||| |||||||||||  |||||| | |||| |||||||||||||||||||    
T  9157366 cattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 9157313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 21630098 - 21630045
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||| ||||||||    
T  21630098 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcac 21630045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 29179653 - 29179596
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  || ||||| |||| |||||||||||||||||| ||||    
T  29179653 cattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaa 29179596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 32540804 - 32540755
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatg 191  Q
    ||||||| ||||||||||| |||||| || |||| |||||||||||||||    
T  32540804 cattgtgacattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 33219663 - 33219712
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||||||| |||||||| |||| ||| |||||||||||| ||||||    
T  33219663 cattgtgattgatcaatgtcaccaatgtcatccaactctatgttacccaa 33219712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 49445014 - 49445051
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatattttccg 209  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  49445014 caatgtcacccaactctatgtcacccaagtattttccg 49445051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 38674540 - 38674504
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  38674540 caatatcacccaactccatgtcacccaagtattttcc 38674504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 41753021 - 41752954
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  41753021 acattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 41752954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 43139791 - 43139857
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  43139791 cattgtggcattgttattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttcc 43139857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 1801502 - 1801445
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||    
T  1801502 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaa 1801445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 51046155 - 51046223
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    |||| |||||||||||||| ||||||||| |||| ||| ||||||||||||||||||| ||||||||||    
T  51046155 cattatggcattgtgattggccaatgtcaccaatgtcatccaactctatgtcacccaagtattttccgt 51046223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 33689232 - 33689179
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||    
T  33689232 cattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcac 33689179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 41753046 - 41753103
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||||||||||| ||||||||| |||| |||| ||||||||||||||||||    
T  41753046 cattgtggcattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaa 41753103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 18321705 - 18321657
Alignment:
Q  144 ttgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgt 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  18321705 ttgtgacattgtgattgaccaatgtcaccaatatcacccaactctatgt 18321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 47492129 - 47492195
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||| ||||||||||| ||||| | | |||| ||||||||||||||||||||||| ||||||||    
T  47492129 cattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcacccaactattttcc 47492195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 45103165 - 45103108
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||| |||| ||| |||| |||||||||||||||||||||||    
T  45103165 cattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaa 45103108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 51046130 - 51046070
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    |||||||| |||| ||||||| |||||||| |||||||| |||||||||||||| ||||||    
T  51046130 acattgtgacattatgattgatcaatgtcaccaatatcatccaactctatgtcatccaaat 51046070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 30734492 - 30734541
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||| ||||||||| |||| ||||| |||||||||||||||||    
T  30734492 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 30734541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 30580841 - 30580890
Alignment:
Q  145 tgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtca 194  Q
    |||| |||||||||||||||||||||  ||| |||||||| |||||||||    
T  30580841 tgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 30734458 - 30734405
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    ||||||| ||||||||| |  ||||||||||||| ||||| |||||||||||||    
T  30734458 cattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcac 30734405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 50524759 - 50524706
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtca 194  Q
    |||||||| |||| ||||||  ||||||||||| |||||| |||||||||||||    
T  50524759 acattgtgacattatgattggtcaatgtcatcattatcactcaactctatgtca 50524706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 50524792 - 50524841
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||||| ||| ||| |||| |||| ||||||||||||||||||    
T  50524792 cattgtgattgactaatatcaccaatgtcactcaactctatgtcacccaa 50524841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 1801598 - 1801634
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  1801598 caatgtcacccaactctatgtcacccaagtattttcc 1801634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 55223279 - 55223235
Alignment:
Q  151 attgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||||||||||||| ||| |||| ||||| |||||||||||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcac 55223235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 8243470 - 8243536
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||    
T  8243470 cattgtggcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcacccaagtattttcc 8243536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 35441051 - 35441116
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttc 207  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||    
T  35441051 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 35441116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 5033217 - 5033150
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccg 209  Q
    |||||||||||||||||||  |||||||| |||| ||||||||||||||||||||||| |||||||||    
T  5033217 cattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttccg 5033150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 2581881 - 2581815
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||| ||||||||    
T  2581881 cattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagtattttcc 2581815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 22649901 - 22649833
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    ||||||||||||||||||  ||||||||| |||| |||| |||||||||||||||||| ||||||||||    
T  22649901 cattgtggcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagtattttccgt 22649833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 33841673 - 33841739
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||||||||| ||||||  |||||||| |||| ||||||||||||||||||||||| ||||||||    
T  33841673 cattgtggcattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 33841739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 5667153 - 5667096
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  5667153 cattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaa 5667096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 45191183 - 45191126
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||||||||||||| | |||||||| |||||||| |||||||||||||||||||    
T  45191183 cattgtggcattgtgattaatcaatgtcaccaatatcatccaactctatgtcacccaa 45191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 10086814 - 10086748
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttc 207  Q
    ||||| || |||||||||||||||||||||  ||| |||||||| |||||||||||||| |||||||    
T  10086814 acattatgacattgtgattgaccaatgtcactaatgtcacccaattctatgtcacccaagtattttc 10086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 5033243 - 5033300
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||||||||||||||||    
T  5033243 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 5033300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 8796478 - 8796421
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| ||||||||||||||||| |||  ||||||||| |||||||||||||||||    
T  8796478 cattgtgacattgtgattgaccaatatcacaaatatcacctaactctatgtcacccaa 8796421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 43844519 - 43844468
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||| ||||||    
T  43844519 cattatgattaaccaatatcatcaatatcacccaactctatgtcatccaaat 43844468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 10086838 - 10086891
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtca 194  Q
    |||||||| |||||||||||  |||||||| |||| ||||||||||||||||||    
T  10086838 acattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 33841647 - 33841590
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| || ||||||||  |||||||| |||| |||||||||||||||||||||||    
T  33841647 cattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 33841590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 35441025 - 35440968
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  |||||||| |||| ||||||||||||| |||||||||    
T  35441025 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaa 35440968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 43844551 - 43844608
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||| |||| ||| |||| ||| |||||||||||||||||||    
T  43844551 cattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaa 43844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 45191208 - 45191272
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattt 205  Q
    |||||||  |||| ||||||  |||||||| |||||||| ||||||||||||||||||| |||||    
T  45191208 acattgtaacattttgattggtcaatgtcaccaatatcatccaactctatgtcacccaagtattt 45191272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 5667187 - 5667245
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||||| |||| ||||||||| |||| ||| | ||||||||||||||||| ||||||||    
T  5667187 cattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagtattttcc 5667245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 551247 - 551313
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||||||||    
T  551247 cattgtggcattgtgattggccaatgtcaccaatatcatccaattctatgtcacccaaatattttcc 551313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 24975808 - 24975742
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||||    
T  24975808 cattgtggcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagtattttcc 24975742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 17750984 - 17751037
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||    
T  17750984 cattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcac 17751037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 24587517 - 24587463
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    ||||||| |||||||||||||||||||||  ||| ||||||||||||||||||||    
T  24587517 cattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcacc 24587463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 13043539 - 13043598
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    |||||||  |||||||||  ||||||||| ||||||||| ||||||||||||||||||||    
T  13043539 cattgtgatattgtgattagccaatgtcaccaatatcactcaactctatgtcacccaaat 13043598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 12343182 - 12343232
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgt 192  Q
    ||||||| ||||||||||| ||||||||| |||| ||||||||||||||||    
T  12343182 cattgtgacattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 24618649 - 24618604
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  24618649 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 24618604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 13043484 - 13043438
Alignment:
Q  162 ccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||| ||| |||| |||||||| |||||||||||||||||||||||    
T  13043484 ccaatatcaccaatgtcacccaattctatgtcacccaaatattttcc 13043438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 17750959 - 17750906
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||||| ||||||||||||||||||||| |||| |||  ||||||||||||||    
T  17750959 acattgtgacattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcac 17750906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 551222 - 551193
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtca 170  Q
    ||||||||||||||||||||||||||||||    
T  551222 acattgtggcattgtgattgaccaatgtca 551193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 29508773 - 29508839
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  29508773 cattgcggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtattttcc 29508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 9173063 - 9173129
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||| |||||||||||    
T  9173063 cattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcacctaaatattttcc 9173129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 6217280 - 6217223
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||    
T  6217280 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaa 6217223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 16514480 - 16514412
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttccgt 210  Q
    |||| |||||| ||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  16514480 cattatggcatagtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttccgt 16514412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 14229409 - 14229355
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    ||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  14229409 cattgtgacattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcacc 14229355  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 16514506 - 16514563
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||||||||||||||||    
T  16514506 cattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaa 16514563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 37961788 - 37961845
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||||||||||||||  ||||||||  |||||||| ||||||||||||||||||    
T  37961788 cattgtggcattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaa 37961845  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 33018627 - 33018679
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtca 194  Q
    ||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||    
T  33018627 cattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 14892350 - 14892401
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    |||||||||||| |||||||| |||| ||| |||||||||||||||||||||    
T  14892350 cattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaaat 14892401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 38933669 - 38933726
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||| |||||| |||| |||| |||| |||||||||||||||||||||||    
T  38933669 cattgtgacattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaa 38933726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 29508747 - 29508692
Alignment:
Q  142 cattgtggcatt-gtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    |||||||||||| |||||||  |||||||| |||| ||||||||||||||||||||    
T  29508747 cattgtggcatttgtgattggtcaatgtcaccaatgtcacccaactctatgtcacc 29508692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 45213892 - 45213935
Alignment:
Q  152 ttgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||||||  ||||||||||||| |||||||||||||||||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcac 45213935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 6722032 - 6722090
Alignment:
Q  141 acattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    |||||||| ||||||||||| ||||| |||  ||| ||| |||||||||||||||||||    
T  6722032 acattgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaa 6722090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 14470640 - 14470595
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    |||||||||||  |||||||| |||| |||||||||||||||||||    
T  14470640 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 14470595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 32545870 - 32545927
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||| |||||| ||||||||| |||| ||||  |||||||||||||||||    
T  32545870 cattgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaa 32545927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 6217327 - 6217363
Alignment:
Q  172 caatatcacccaactctatgtcacccaaatattttcc 208  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  6217327 caatgtcacccaactctatgtcacccaagtattttcc 6217363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 32545840 - 32545788
Alignment:
Q  144 ttgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacc 196  Q
    ||||| ||| ||| ||||||||||||| |||| ||||| ||||||||||||||    
T  32545840 ttgtgacatcgtggttgaccaatgtcaccaatgtcacctaactctatgtcacc 32545788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 37633025 - 37632981
Alignment:
Q  164 aatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||| |||| ||||| ||||||||||||||||| ||||||||    
T  37633025 aatgtcaccaatgtcaccaaactctatgtcacccaagtattttcc 37632981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 27302 - 27368
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaatattttcc 208  Q
    ||||||||||||||||||| ||||| ||| |||| |||||||||||||| |||||||| ||||||||    
T  27302 cattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcacccaagtattttcc 27368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 27268 - 27219
Alignment:
Q  150 cattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||||||| ||||| |||  ||| |||||||||||||||||||||||    
T  27268 cattgtgattggccaatatcactaatgtcacccaactctatgtcacccaa 27219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 49759 - 49702
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaa 199  Q
    ||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  49759 cattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaa 49702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 19178 - 19119
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcacccaaat 201  Q
    ||||||| |||||||||||| |||| |||||||| ||||||||||||||||||| |||||    
T  19178 cattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcacacaaat 19119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 7103 - 7050
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    ||||||| ||||||||||| | ||| ||| |||| |||||||||||||||||||    
T  7103 cattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 7129 - 7181
Alignment:
Q  142 cattgtggcattgtgattgaccaatgtcatcaatatcacccaactctatgtcac 195  Q
    ||||||| ||||||||||| ||||||||| |||| ||| |||||||||||||||    
T  7129 cattgtgacattgtgattggccaatgtcaccaatgtca-ccaactctatgtcac 7181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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