View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10660_high_18 (Length: 227)

Name: NF10660_high_18
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10660_high_18
NF10660_high_18
[»] scaffold0003 (1 HSPs)
scaffold0003 (14-227)||(64646-64859)
[»] chr6 (28 HSPs)
chr6 (14-227)||(27422504-27422717)
chr6 (18-223)||(26651035-26651240)
chr6 (18-223)||(26757003-26757208)
chr6 (14-155)||(26966097-26966238)
chr6 (14-148)||(27714117-27714251)
chr6 (14-148)||(27702350-27702484)
chr6 (90-223)||(26964280-26964411)
chr6 (15-147)||(26890066-26890198)
chr6 (14-148)||(26628012-26628146)
chr6 (50-144)||(26640678-26640772)
chr6 (14-148)||(26733989-26734123)
chr6 (50-144)||(26746644-26746738)
chr6 (13-150)||(26631458-26631594)
chr6 (13-150)||(26737433-26737569)
chr6 (13-146)||(26828368-26828501)
chr6 (147-227)||(26629542-26629622)
chr6 (147-227)||(26735518-26735598)
chr6 (17-100)||(27652256-27652339)
chr6 (86-148)||(27652343-27652405)
chr6 (65-148)||(31291376-31291459)
chr6 (53-146)||(26853623-26853714)
chr6 (157-227)||(31291194-31291264)
chr6 (170-223)||(27652530-27652583)
chr6 (18-112)||(27588393-27588487)
chr6 (54-101)||(28790203-28790250)
chr6 (15-148)||(27712683-27712817)
chr6 (14-59)||(31289405-31289450)
chr6 (68-104)||(26807297-26807333)
[»] scaffold0349 (1 HSPs)
scaffold0349 (14-148)||(17693-17827)
[»] chr8 (1 HSPs)
chr8 (13-148)||(29270009-29270144)
[»] chr4 (3 HSPs)
chr4 (157-227)||(18692628-18692698)
chr4 (38-148)||(5083085-5083197)
chr4 (157-197)||(18674557-18674597)
[»] chr1 (1 HSPs)
chr1 (38-115)||(26141211-26141288)
[»] scaffold0277 (2 HSPs)
scaffold0277 (54-112)||(816-874)
scaffold0277 (54-101)||(9949-9996)
[»] scaffold0419 (1 HSPs)
scaffold0419 (54-101)||(11349-11396)


Alignment Details
Target: scaffold0003 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 64859 - 64646
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 113  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  64859 aacggattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 64760  T
Q  114 aagtaaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtc 213  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||  || | ||||||||||||||||||||| ||||||||||||||| |||    
T  64759 aagtaaatgcttagttttcgttagagaaaagttgcctgagtttcaaacataatttctttatgtttatttcaacaagagagaatccactcttgaaattgtc 64660  T
Q  214 atacaaaccattat 227  Q
    ||||||||||||||    
T  64659 atacaaaccattat 64646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 27422504 - 27422717
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 113  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27422504 aacggattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 27422603  T
Q  114 aagtaaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtc 213  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||  || | ||||||||||||||||||||| ||||||||||||||| |||    
T  27422604 aagtaaatgcttagttttcgttagagaaaagttgcctgagtttcaaacataatttctttatgtttatttcaacaagagagaatccactcttgaaattgtc 27422703  T
Q  214 atacaaaccattat 227  Q
    ||||||||||||||    
T  27422704 atacaaaccattat 27422717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 26651240 - 26651035
Alignment:
Q  18 gattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt 117  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26651240 gattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtgactacagatggtttcctgacaatgtacagacaaagaacaagt 26651141  T
Q  118 aaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatac 217  Q
     ||| | ||||||| |||| |||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||| |||| ||    
T  26651140 taattcgtagttttggttaaagaaaacttgcctgaatttgaaacataactaccttatgtttatttcaacaagagaggatccacttttgaaattgtcaaac 26651041  T
Q  218 aaacca 223  Q
    ||||||    
T  26651040 aaacca 26651035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 26757208 - 26757003
Alignment:
Q  18 gattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt 117  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26757208 gattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtgactacagatggtttcctgacaatgtacagacaaagaacaagt 26757109  T
Q  118 aaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatac 217  Q
     ||| | ||||||| |||| |||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||| |||| ||    
T  26757108 taattcgtagttttggttaaagaaaacttgcctgaatttgaaacataactaccttatgtttatttcaacaagagaggatccacttttgaaattgtcaaac 26757009  T
Q  218 aaacca 223  Q
    ||||||    
T  26757008 aaacca 26757003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 26966238 - 26966097
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 113  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  26966238 aacggattctgtggtgcaagcaatctctagacatgtcgcatgacagtgcaaatagccagatgactacagatggtgtcctgacaatgtacagtcaaagaac 26966139  T
Q  114 aagtaaatgcttagttttagttagagaaaagttgcctgaatt 155  Q
    ||||||| |||||||||| ||| |||||||||||||||||||    
T  26966138 aagtaaaagcttagttttggtttgagaaaagttgcctgaatt 26966097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 27714117 - 27714251
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 113  Q
    ||||||||||||| ||  ||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  27714117 aacggattctgcgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaac 27714216  T
Q  114 aagtaaatgcttagttttagttagagaaaagttgc 148  Q
    ||| |||| ||||||||| ||||||||||||||||    
T  27714217 aagaaaatacttagttttggttagagaaaagttgc 27714251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 27702350 - 27702484
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 113  Q
    ||||||||||| | ||  ||||| |||||||| ||||||||||||||||| |||||||||||||||||  | ||||||||||||||||||| |||| |||    
T  27702350 aacggattctgtgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaac 27702449  T
Q  114 aagtaaatgcttagttttagttagagaaaagttgc 148  Q
    ||| |||| ||||||||| ||||||||||||||||    
T  27702450 aagaaaatacttagttttggttagagaaaagttgc 27702484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 26964411 - 26964280
Alignment:
Q  90 cctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaagttgcctgaatttgaaacataacatcctcatgtttatttcaacaag 189  Q
    ||||||||||||||||||||||| ||||||||   ||||||| |||||||| || ||||||||||||||||||||||  ||| ||||||||||||||  |    
T  26964411 cctgacaatgtacagacaaagaaaaagtaaatttgtagttttggttagagataacttgcctgaatttgaaacataactaccttatgtttatttcaac--g 26964314  T
Q  190 agaggatccactcttgaaatagtcatacaaacca 223  Q
    |||||||||||| ||||||| ||| |||||||||    
T  26964313 agaggatccacttttgaaattgtcgtacaaacca 26964280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 26890198 - 26890066
Alignment:
Q  15 acggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaaca 114  Q
    |||||||||| ||||||| ||| |||||||||| || ||||||| |  | |||||||||||||||||||| ||||||||||||||||||| |||| || |    
T  26890198 acggattctgtggtgcgaacaacctctagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaa 26890099  T
Q  115 agtaaatgcttagttttagttagagaaaagttg 147  Q
    | |||||| |||||||| |||||||||||||||    
T  26890098 aataaatgtttagttttggttagagaaaagttg 26890066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 26628146 - 26628012
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 113  Q
    |||||||| ||  |||| ||||| |||||||||| | ||||||||||||| | ||||||||||||| |  ||||||||||||||||||||| ||||||||    
T  26628146 aacggattttgttgtgcaagcaacctctagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaac 26628047  T
Q  114 aagtaaatgcttagttttagttagagaaaagttgc 148  Q
    ||  |||| ||||||||| ||||||||||||||||    
T  26628046 aaaaaaatacttagttttggttagagaaaagttgc 26628012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 26640772 - 26640678
Alignment:
Q  50 cgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaag 144  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||    
T  26640772 cgcatgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag 26640678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 26734123 - 26733989
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 113  Q
    |||||||| ||  |||| ||||| |||||||||| | ||||||||||||| | ||||||||||||| |  ||||||||||||||||||||| ||||||||    
T  26734123 aacggattttgttgtgcaagcaacctctagacatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaac 26734024  T
Q  114 aagtaaatgcttagttttagttagagaaaagttgc 148  Q
    ||  |||| ||||||||| ||||||||||||||||    
T  26734023 aaaaaaatacttagttttggttagagaaaagttgc 26733989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 26746738 - 26746644
Alignment:
Q  50 cgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaag 144  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||    
T  26746738 cgcatgacaatgcgaatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag 26746644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 26631594 - 26631458
Alignment:
Q  13 aaacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 112  Q
    |||||||||||| | ||||||||| |||||||||||| | | |||||||||  | ||||||||||||||||||| ||||||| ||||||||  | ||||     
T  26631594 aaacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagag 26631496  T
Q  113 caagtaaatgcttagttttagttagagaaaagttgcct 150  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  26631495 caagtaaatgctttgttttggttagagaaaagttgcct 26631458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 26737569 - 26737433
Alignment:
Q  13 aaacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 112  Q
    |||||||||||| | ||||||||| |||||||||||| | | |||||||||  | ||||||||||||||||||| ||||||| ||||||||  | ||||     
T  26737569 aaacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagag 26737471  T
Q  113 caagtaaatgcttagttttagttagagaaaagttgcct 150  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  26737470 caagtaaatgctttgttttggttagagaaaagttgcct 26737433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 26828501 - 26828368
Alignment:
Q  13 aaacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 112  Q
    ||||||||| || ||| ||||||| | ||||||||  |||||||||||||  |||||||||| |||||||||||  |||||||||||||||| |||| ||    
T  26828501 aaacggattttgtggtacgagcaaccactagacatcccgcatgacaatgcgaatagccagatcactacagatggactcctgacaatgtacagtcaaaaaa 26828402  T
Q  113 caagtaaatgcttagttttagttagagaaaagtt 146  Q
    |||| |||||||||||||| | ||||||||||||    
T  26828401 caagaaaatgcttagttttggatagagaaaagtt 26828368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 26629622 - 26629542
Alignment:
Q  147 gcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattat 227  Q
    |||| ||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||    
T  26629622 gcctaaatttgaaacataacttccttatgtttattccaacatgagaggatccactcttgaaattgtcatataaaccattat 26629542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 26735598 - 26735518
Alignment:
Q  147 gcctgaatttgaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattat 227  Q
    |||| ||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||    
T  26735598 gcctaaatttgaaacataacttccttatgtttattccaacatgagaggatccactcttgaaattgtcatataaaccattat 26735518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 27652256 - 27652339
Alignment:
Q  17 ggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgt 100  Q
    ||||| || |||||||||||| ||||||||| || |||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  27652256 ggattttgtggtgcgagcaatgtctagacatatcacatgacaatgcaaatagccagatgaccatagatggtttcctgacaatgt 27652339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 27652343 - 27652405
Alignment:
Q  86 gtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaagttgc 148  Q
    |||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||||||||    
T  27652343 gtttcctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgc 27652405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 31291459 - 31291376
Alignment:
Q  65 atagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaagttgc 148  Q
    |||||||||||| |||||||||||||||| ||||  |||  | ||||||||| |||| ||||||||| ||||||||||||||||    
T  31291459 atagccagatgattacagatggtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgc 31291376  T

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Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 26853714 - 26853623
Alignment:
Q  53 atgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttagttagagaaaagtt 146  Q
    ||||||||||| ||||||||||||| ||||||||  | ||||||||| || | |||||||||||| ||| ||||||||| ||||||||||||||    
T  26853714 atgacaatgcaaatagccagatgaccacagatgg-atactgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaagtt 26853623  T

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Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 31291264 - 31291194
Alignment:
Q  157 gaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattat 227  Q
    |||||||||| |  |||| |||||||||||| ||||||||||||||||||||| || ||||| ||||||||    
T  31291264 gaaacataacttagtcatttttatttcaacatgagaggatccactcttgaaattgtaatacacaccattat 31291194  T

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Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 27652530 - 27652583
Alignment:
Q  170 ctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaacca 223  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||| ||||    
T  27652530 ctcatgtttatttcaacatgagaggatccactcttgaaattttcatacacacca 27652583  T

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Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 27588393 - 27588487
Alignment:
Q  18 gattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 112  Q
    ||||||| |||| || | ||||||| |||| ||| ||||||| ||  | |||||||  ||||||||||||||||||||||| ||||| |||||||    
T  27588393 gattctgtggtgtgaaccatctctacacatctcgaatgacaacgccgaaagccagacaactacagatggtttcctgacaatatacagtcaaagaa 27588487  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 28790250 - 28790203
Alignment:
Q  54 tgacaatgcacatagccagatgactacagatggtttcctgacaatgta 101  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||    
T  28790250 tgacaacgcaaaaagccagacgactacagatggtttcctgacaatgta 28790203  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 27712683 - 27712817
Alignment:
Q  15 acggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaaca 114  Q
    |||||||||| |||  |||| | || ||||||| ||| ||||||||||| | |||||||  |||| |||||||||  || |||||||||   |||||| |    
T  27712683 acggattctgtggtttgagccacctatagacatctcgtatgacaatgcaaaaagccagacaactatagatggttttttgtcaatgtacaataaaagaaga 27712782  T
Q  115 agtaaatgcttagtt-ttagttagagaaaagttgc 148  Q
    | |  ||||||||||  ||||||||||||||||||    
T  27712783 aatggatgcttagttaatagttagagaaaagttgc 27712817  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 31289450 - 31289405
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaa 59  Q
    ||||||||||| | ||||||||| | ||||||||||||||||||||    
T  31289450 aacggattctgtgctgcgagcaaccactagacatgtcgcatgacaa 31289405  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 26807333 - 26807297
Alignment:
Q  68 gccagatgactacagatggtttcctgacaatgtacag 104  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  26807333 gccagacgactacagatggtttcctgacaaagtacag 26807297  T

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Target: scaffold0349 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 17827 - 17693
Alignment:
Q  14 aacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaac 113  Q
    ||||||||||||| ||  ||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  17827 aacggattctgcgctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaac 17728  T
Q  114 aagtaaatgcttagttttagttagagaaaagttgc 148  Q
    ||| |||| ||||||||| ||||||||||||||||    
T  17727 aagaaaatacttagttttggttagagaaaagttgc 17693  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 29270009 - 29270144
Alignment:
Q  13 aaacggattctgcggtgcgagcaatctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 112  Q
    ||||||||| || | || |||||| |||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||    
T  29270009 aaacggattatgtgctgtgagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaa 29270108  T
Q  113 caagtaaatgcttagttttagttagagaaaagttgc 148  Q
    |||| |||| ||||||||| ||||||||||||||||    
T  29270109 caagaaaatacttagttttggttagagaaaagttgc 29270144  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 18692628 - 18692698
Alignment:
Q  157 gaaacataacatcctcatgtttatttcaacaagagaggatccactcttgaaatagtcatacaaaccattat 227  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  18692628 gaaacataacgtcctcatgtttatttcaacatgagaggatccactcttgaaattgtcatacacaccattat 18692698  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 5083197 - 5083085
Alignment:
Q  38 ctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttt-tagtt- 135  Q
    |||||||||| ||| ||||||||||| | |||||||  |||||||||||||| ||| ||||||||||  |||||| || | |||||||||||| |||||     
T  5083197 ctctagacatctcgtatgacaatgcaaaaagccagacaactacagatggttttctgtcaatgtacagtaaaagaagaaatgaatgcttagtttatagtta 5083098  T
Q  136 agagaaaagttgc 148  Q
    |||||||||||||    
T  5083097 agagaaaagttgc 5083085  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 18674557 - 18674597
Alignment:
Q  157 gaaacataacatcctcatgtttatttcaacaagagaggatc 197  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  18674557 gaaacataacgtcctcatgtttatttcaacatgagaggatc 18674597  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 26141288 - 26141211
Alignment:
Q  38 ctctagacatgtcgcatgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaa 115  Q
    |||||||||| | | ||||||||||| |||||||||  |||| ||||||||| |||||||||||||  ||||||||||    
T  26141288 ctctagacatctagaatgacaatgcaaatagccagacaactatagatggttttctgacaatgtacattcaaagaacaa 26141211  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 816 - 874
Alignment:
Q  54 tgacaatgcacatagccagatgactacagatggtttcctgacaatgtacagacaaagaa 112  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||| | |||||||    
T  816 tgacaacgcaaaaagccagacgactacagatggtttcctgacaatgtactgtcaaagaa 874  T

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Target: scaffold0277; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 9949 - 9996
Alignment:
Q  54 tgacaatgcacatagccagatgactacagatggtttcctgacaatgta 101  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||    
T  9949 tgacaacgcaaaaagccagacgactacagatggtttcctgacaatgta 9996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 11396 - 11349
Alignment:
Q  54 tgacaatgcacatagccagatgactacagatggtttcctgacaatgta 101  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||    
T  11396 tgacaacgcaaaaagccagacgactacagatggtttcctgacaatgta 11349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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