View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_high_4 (Length: 300)
Name: NF10660_high_4
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 36123498 - 36123796
Alignment:
| Q |
1 |
tcaaattactataaacaatgcaaaaaattgaaccaattgtgttcaaaattgtgattgatacatgcttagtcnnnnnnnnncctttcctttaaatatgctt |
100 |
Q |
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| T |
36123498 |
tcaaattactataaacaatgcaaaaaattgaaccaattgtgttcaaaattgtgattgatacatgcttagtctttttttt-cctttcctttaaatatgctt |
36123596 |
T |
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| Q |
101 |
atacattttagtcacatgctgtgtgacttgcgttttattcttagacatttcactcacatgatatgttgtgacctagtgttttgagaatatgctcatannn |
200 |
Q |
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| T |
36123597 |
agacattttagtcacatgctgtgtgacttgcgttttattcttagacatttcactcacatgatatgttgtgacctagtgttttgagaatatgctcatattt |
36123696 |
T |
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| Q |
201 |
nnnnggagtacgctgtaaaactactcccacaaattgacgactcaagaatttacttaagaaagagtgagtaacaaatgagaaatcatatgcttaggcaaag |
300 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36123697 |
ttttggagtacgctgtaaaattactccctcaaattgacgactcaagaatttacttaagaaagagtgagtaacaaatgagaaatcatatgcttaggcaaag |
36123796 |
T |
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