View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_high_7 (Length: 274)
Name: NF10660_high_7
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_high_7 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 1171946 - 1172204
Alignment:
| Q |
16 |
attaatgtaggtctaaataatagcaactaaaaatgaaactaaactactagaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaatgt |
115 |
Q |
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| T |
1171946 |
attaatgtaggtctaaataatagcaactaaaaatgaaactaaactactagaagtgaaacaaatgtgtttaaagccaaaaactcaaacacaaaatcaatgt |
1172045 |
T |
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| Q |
116 |
ggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccattatacccaccattgtgcccgccattcacgatt |
215 |
Q |
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| T |
1172046 |
ggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccattatatccaccattgtgcccgccattcgcgatt |
1172145 |
T |
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| Q |
216 |
gagccacctatatatccaccaacaattccacccgctactccacctccaaatccccctcc |
274 |
Q |
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| T |
1172146 |
gagccacctatatatccaccaacaattccacccgccactccacctccaaatccccctcc |
1172204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 1181191 - 1181438
Alignment:
| Q |
16 |
attaatgtaggtctaaataatagcaactaaaaatgaaactaaa---ctactagaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaa |
112 |
Q |
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| T |
1181191 |
attaatgtaggtctaaataatagcaactaaaaatgaaacttaattactactagaagtaaaacaaatgtgtttaaagccaaaagctcaaacacaaaatcaa |
1181290 |
T |
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| Q |
113 |
tgtggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccattatacccaccattgtgcccgccattcacg |
212 |
Q |
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| T |
1181291 |
agttgagacacaaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccattatatccaccattgtgcccgccattggcg |
1181390 |
T |
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| Q |
213 |
attgagccacctatatatccaccaacaattccacccgctactccacct |
260 |
Q |
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| T |
1181391 |
attgagccacctatatatccaccaacaattccacccgccactccacct |
1181438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 1148459 - 1148559
Alignment:
| Q |
84 |
taaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccat |
183 |
Q |
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| T |
1148459 |
taaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaattatgagtaccattgtgcccaccat |
1148558 |
T |
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| Q |
184 |
t |
184 |
Q |
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| T |
1148559 |
t |
1148559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 1164559 - 1164726
Alignment:
| Q |
16 |
attaatgtaggtctaaataatagcaactaaaaatgaaactaaactactagaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaatgt |
115 |
Q |
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|||||||||| ||||||| |||||||||| |||||| | |||| | |||||||||| | ||||| |||| ||||||||||| ||| ||||||||||| |
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| T |
1164559 |
attaatgtagacctaaatagaagcaactaaagatgaaatttaacttgtggaagtgaaacca-tgtgtctaaagccaaaagctcatacataaaatcaatgt |
1164657 |
T |
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| Q |
116 |
ggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccatt |
184 |
Q |
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| T |
1164658 |
tgatacacaaatatgaggccctcccgataatgttgatgcagaattatgagtaccattgtgcccaccatt |
1164726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 1141662 - 1141766
Alignment:
| Q |
53 |
actaaactactagaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgtt |
152 |
Q |
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| T |
1141662 |
actaaactagtggaagtgaaacaa-tatgattataaccaaaagctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgat |
1141760 |
T |
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| Q |
153 |
gcagaa |
158 |
Q |
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| T |
1141761 |
gcagaa |
1141766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 1137003 - 1137112
Alignment:
| Q |
48 |
atgaaactaaactactagaagtgaaacaaatgtgtttaaaaccaaaagctcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatg |
147 |
Q |
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| T |
1137003 |
atgatactaaactagtggaagtgaaacaa-tgtaattaaagccaaaagctcaaacataaaagaaatgttgagacacaaacataaggccctgcagataatg |
1137101 |
T |
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| Q |
148 |
ttgttgcagaa |
158 |
Q |
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| T |
1137102 |
atggtgcagaa |
1137112 |
T |
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