View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_1 (Length: 441)
Name: NF10660_low_1
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 161 - 381
Target Start/End: Complemental strand, 44153157 - 44152937
Alignment:
| Q |
161 |
aattaacaggatcttactactatactaattataccttagaaatgaggacattaatcccagcatgcttgttgtcccaaccaaactcattaatggtgtcacc |
260 |
Q |
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| T |
44153157 |
aattaacaggatcttactactatactaattgtaccttagaaatgaggacattaatcccagcatgcttgttgtcccaaccaaactcattaatggtgtcacc |
44153058 |
T |
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| Q |
261 |
agctctcaaaacaacctcgttacgaataatgtattctctgtatagacgcctacgcgaggccttgtgcaaccacgctgcagcccaaagtaactcatcctat |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44153057 |
agctctcaaaacaacctcgttacgaataatgtattctctgtatagacgtctacgcgaggccttgtgcaaccacgctgcagcccaaagtaactcatcctat |
44152958 |
T |
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| Q |
361 |
tttccaattaattaaattaaa |
381 |
Q |
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||||||||||||||||||||| |
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| T |
44152957 |
tttccaattaattaaattaaa |
44152937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 55014070 - 55014030
Alignment:
| Q |
217 |
ccagcatgcttgttgtcccaaccaaactcattaatggtgtc |
257 |
Q |
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| T |
55014070 |
ccagcatgcttgttgtcccaaccgaactcattgatgttgtc |
55014030 |
T |
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