View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_10 (Length: 302)
Name: NF10660_low_10
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 3124633 - 3124346
Alignment:
| Q |
1 |
agtggcccggagtttgtctgaataagtatgtataaaatacaattgcgctgtttaatagattgtcttgtgaacaatgttggttgttaaatgaaggatggag |
100 |
Q |
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| T |
3124633 |
agtggcccggagtttgtctgaataagtatgtataaaatacaattgcgctgtttaatagattgtcttgtgaacaataatggttgttaaatgaaggatggag |
3124534 |
T |
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| Q |
101 |
aaggtaaaattaaggtggaaaagcagtcaagcaaaaatcctgggttctacggtatcaatattaggtgctctcgcagttgttctttataagggtccaataa |
200 |
Q |
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| T |
3124533 |
aaggtaaaattaaggtggaaaagcagtcaagcaaaaatcctgggttctacggtatcaatattaggtgctctcacagttgttctttataagggtccaataa |
3124434 |
T |
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| Q |
201 |
tcataccctcaccatcaacacaatcaccacctattattcattctccaatca---cttcaacaacagaatcaaattggattcttggtgg |
285 |
Q |
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| T |
3124433 |
tcataccctcaccatcaacacaatcaccacctattattcattctccaatcacttcttcaacaacagaatcaaattggattcttggtgg |
3124346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 65 - 285
Target Start/End: Original strand, 3557314 - 3557537
Alignment:
| Q |
65 |
ttgtgaacaatgttggttgttaaatgaaggatggagaaggtaaaattaaggtggaaaagcagtcaagcaaaaatcctgggttctacggtatcaatattag |
164 |
Q |
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| T |
3557314 |
ttgtgaacaataatggttgttaaatgaaggatggagaaggtaaaattaagatggaaaagcagtcaagcaaaaatcttgggttctacggtatcaatattag |
3557413 |
T |
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| Q |
165 |
gtgctctcgcagttgttctttataagggtccaataatcataccctcaccatcaacacaatcaccacctattattcattctccaatca---cttcaacaac |
261 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3557414 |
gtgcactcctagttgttctttataagggtccaataatcataccctcaccatcaacacaatcaccacctattattcattctccaatcacttcttcaacaac |
3557513 |
T |
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| Q |
262 |
agaatcaaattggattcttggtgg |
285 |
Q |
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| T |
3557514 |
agaatcaaattggattcttggtgg |
3557537 |
T |
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