View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_12 (Length: 296)
Name: NF10660_low_12
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 1984456 - 1984172
Alignment:
| Q |
1 |
catcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagg |
100 |
Q |
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| T |
1984456 |
catcggttggatcgggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagg |
1984357 |
T |
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| Q |
101 |
gattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataag |
200 |
Q |
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| T |
1984356 |
gattattctaaatcacttaaagagtgatcaagaagtggctaacatgtggaatggaatgagcaagttattgagattgtcaagggtaccattcttggataag |
1984257 |
T |
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| Q |
201 |
actattgaagatgttaacaagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
285 |
Q |
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| T |
1984256 |
actattgaagatgtaaaccagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
1984172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 1977535 - 1977251
Alignment:
| Q |
1 |
catcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagg |
100 |
Q |
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| T |
1977535 |
catcggttggatcgggacctttggttataactcgttacacagaattgatgaatggaatcatagactccgagaaagatgcaaagattctaagagaaaaagg |
1977436 |
T |
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| Q |
101 |
gattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataag |
200 |
Q |
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| T |
1977435 |
gattattctaaatcacttaaagagtgatcaagaagtggctaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataag |
1977336 |
T |
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| Q |
201 |
actattgaagatgttaacaagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
285 |
Q |
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| T |
1977335 |
actattgaagatgttaacaagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
1977251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 1948871 - 1949155
Alignment:
| Q |
1 |
catcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagg |
100 |
Q |
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| T |
1948871 |
catcggttggatcgggaccattggttataacacggtacaccgaattgatgaatggaattatagactcggaagatgatgcgaagattctaagagaaaaagg |
1948970 |
T |
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| Q |
101 |
gattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataag |
200 |
Q |
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| T |
1948971 |
gattattttaaatcacttgaaaagtgataaagaagttgctgatatgtggaatggaatgagcaagtcattgagattatcaagggtattgttcttggataag |
1949070 |
T |
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| Q |
201 |
actattgaagatgttaacaagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
285 |
Q |
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| T |
1949071 |
actattgaagatgttaacaagttttataatagtagaatgaaggtgaaaatgttgaaatttatgaagtcttatgtgtttggttcat |
1949155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 5625935 - 5626108
Alignment:
| Q |
45 |
ttgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaagtggccaaca |
144 |
Q |
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| T |
5625935 |
ttgatgaatggaatcatagacactgaggaagatgcaaggattcttagagaaaaaggggttattttgaaccatttaaaaagtgatcaagaggtggctaatt |
5626034 |
T |
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| Q |
145 |
tgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaac |
218 |
Q |
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| T |
5626035 |
tgtggaatggaatgaacaaatccatcaaattgacaagggttccattcttggataaggtcattgaggatgttaac |
5626108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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