View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_14 (Length: 293)
Name: NF10660_low_14
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 35919662 - 35919457
Alignment:
| Q |
10 |
tagacttctaataatgtaatttcataagctactcccaccatttacttacaactttattatctctctagaaaaatccaactttttcacttcactttagttc |
109 |
Q |
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| T |
35919662 |
tagacttctaataatgtaatttcataagctactcccaccatttacttacaactttattatctctctagaaaaatccaactttttcacttcactttagttc |
35919563 |
T |
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| Q |
110 |
tattttgcaaggccaaactacaaacttaaaatgtatatgcttgtatgatcaaagtagaaacctcaaactcataataaagttatgaacttagtttcaatta |
209 |
Q |
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| T |
35919562 |
tattttgcaaggccaaaccacaaacttataatgtatatgcttgtatgatcaaagtagaaatctcaaactcataataaagttatcaacttagtttcaatta |
35919463 |
T |
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| Q |
210 |
taagga |
215 |
Q |
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|||||| |
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| T |
35919462 |
taagga |
35919457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 132 - 280
Target Start/End: Complemental strand, 35919457 - 35919309
Alignment:
| Q |
132 |
aacttaaaatgtatatgcttgtatgatcaaagtagaaacctcaaactcataataaagttatgaacttagtttcaattataaggacttatttatgtctctt |
231 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35919457 |
aacttataatgtatatgcttgtatgatcaaagtagaaatctcaaactcataataaagttatcaacttagtttcaattataaggacttatttatgtctctt |
35919358 |
T |
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| Q |
232 |
atccaacacccgattattaatcaacttcaaatatctaaaggaatgatct |
280 |
Q |
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| T |
35919357 |
atccaacacccgattattaatcaacttcaaatatctaaaggaatgatct |
35919309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 55318571 - 55318513
Alignment:
| Q |
189 |
ttatgaacttagtttcaattataaggacttatttatgtctcttatccaacacccgatta |
247 |
Q |
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|||| |||||||||| ||||| || ||||||||||||| ||||||||||||||| |||| |
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| T |
55318571 |
ttatcaacttagttttaattaaaatgacttatttatgtatcttatccaacacccaatta |
55318513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 29471181 - 29471233
Alignment:
| Q |
189 |
ttatgaacttagtttcaattataaggacttatttatgtctcttatccaacacc |
241 |
Q |
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|||| |||||| ||| ||||| |||||||||||| ||||| |||||||||||| |
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| T |
29471181 |
ttatcaacttaatttaaattaaaaggacttatttttgtctattatccaacacc |
29471233 |
T |
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