View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10660_low_16 (Length: 285)

Name: NF10660_low_16
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10660_low_16
NF10660_low_16
[»] chr3 (29 HSPs)
chr3 (30-268)||(15606254-15606492)
chr3 (15-268)||(10578141-10578395)
chr3 (1-268)||(15356380-15356649)
chr3 (63-268)||(15599742-15599947)
chr3 (67-268)||(10571427-10571629)
chr3 (58-268)||(13212444-13212654)
chr3 (65-268)||(8491528-8491731)
chr3 (65-268)||(16481318-16481521)
chr3 (65-268)||(6111244-6111446)
chr3 (65-268)||(13258689-13258892)
chr3 (65-268)||(13517953-13518156)
chr3 (65-268)||(17780025-17780226)
chr3 (65-268)||(19081326-19081527)
chr3 (65-268)||(18538139-18538342)
chr3 (65-268)||(15341077-15341282)
chr3 (65-223)||(13691871-13692029)
chr3 (74-262)||(1646363-1646553)
chr3 (65-224)||(18534825-18534984)
chr3 (74-268)||(23014210-23014406)
chr3 (65-223)||(32055274-32055433)
chr3 (65-268)||(16201363-16201566)
chr3 (65-163)||(12564395-12564493)
chr3 (169-253)||(25801352-25801436)
chr3 (70-175)||(6288184-6288288)
chr3 (216-268)||(32056056-32056108)
chr3 (131-178)||(17196702-17196749)
chr3 (65-129)||(25801443-25801508)
chr3 (69-165)||(47699511-47699607)
chr3 (207-263)||(17196750-17196806)
[»] chr6 (15 HSPs)
chr6 (20-268)||(17690256-17690503)
chr6 (24-268)||(29310034-29310276)
chr6 (20-268)||(27297803-27298050)
chr6 (60-268)||(27380082-27380290)
chr6 (60-268)||(27470465-27470673)
chr6 (65-268)||(29316993-29317196)
chr6 (63-268)||(27278511-27278716)
chr6 (63-268)||(27303402-27303607)
chr6 (64-268)||(11652842-11653046)
chr6 (178-268)||(17683430-17683520)
chr6 (170-268)||(18336733-18336831)
chr6 (74-268)||(28755124-28755318)
chr6 (54-168)||(16393328-16393442)
chr6 (132-207)||(2670013-2670091)
chr6 (131-165)||(19346305-19346339)
[»] scaffold0203 (1 HSPs)
scaffold0203 (18-268)||(29000-29247)
[»] chr4 (25 HSPs)
chr4 (16-268)||(26964715-26964965)
chr4 (29-268)||(18263356-18263596)
chr4 (64-268)||(10620167-10620371)
chr4 (20-268)||(5708481-5708729)
chr4 (64-268)||(5715117-5715320)
chr4 (65-268)||(8859336-8859540)
chr4 (65-268)||(28392002-28392205)
chr4 (65-268)||(55613852-55614055)
chr4 (64-268)||(26971609-26971811)
chr4 (64-268)||(10825188-10825390)
chr4 (68-268)||(20579275-20579475)
chr4 (67-268)||(18270217-18270419)
chr4 (65-268)||(869765-869968)
chr4 (30-268)||(19925562-19925798)
chr4 (86-268)||(19919387-19919569)
chr4 (14-268)||(10676371-10676627)
chr4 (14-268)||(10890011-10890267)
chr4 (65-253)||(47387788-47387978)
chr4 (65-268)||(4425468-4425678)
chr4 (30-268)||(10627240-10627453)
chr4 (65-253)||(35224711-35224903)
chr4 (86-228)||(5667049-5667192)
chr4 (87-244)||(55992821-55992971)
chr4 (169-203)||(27031782-27031816)
chr4 (127-162)||(49066009-49066044)
[»] scaffold0234 (2 HSPs)
scaffold0234 (29-268)||(10035-10275)
scaffold0234 (64-268)||(1177-1382)
[»] scaffold0061 (1 HSPs)
scaffold0061 (34-268)||(5025-5259)
[»] chr7 (15 HSPs)
chr7 (52-262)||(11541827-11542037)
chr7 (69-268)||(2652852-2653051)
chr7 (65-268)||(29328932-29329135)
chr7 (65-268)||(11534921-11535125)
chr7 (65-273)||(12751998-12752206)
chr7 (20-268)||(12739686-12739932)
chr7 (63-268)||(15153612-15153817)
chr7 (65-268)||(18562177-18562385)
chr7 (68-268)||(9978972-9979174)
chr7 (50-189)||(11557060-11557199)
chr7 (67-262)||(18256679-18256875)
chr7 (131-253)||(30926254-30926378)
chr7 (128-163)||(7748213-7748248)
chr7 (140-184)||(22947653-22947697)
chr7 (128-162)||(30918034-30918068)
[»] chr1 (11 HSPs)
chr1 (54-268)||(18253174-18253388)
chr1 (68-268)||(18531376-18531576)
chr1 (65-251)||(27130257-27130443)
chr1 (63-268)||(27309410-27309616)
chr1 (74-268)||(16357900-16358097)
chr1 (65-268)||(21169283-21169472)
chr1 (85-268)||(22640727-22640914)
chr1 (64-260)||(9075750-9075932)
chr1 (73-163)||(25662281-25662370)
chr1 (69-165)||(9915730-9915825)
chr1 (20-84)||(10155022-10155086)
[»] scaffold0390 (2 HSPs)
scaffold0390 (29-268)||(12748-12988)
scaffold0390 (107-268)||(5811-5972)
[»] scaffold0705 (1 HSPs)
scaffold0705 (1-241)||(7433-7675)
[»] chr5 (11 HSPs)
chr5 (30-268)||(24694286-24694523)
chr5 (30-252)||(24701055-24701276)
chr5 (74-261)||(18565324-18565512)
chr5 (95-268)||(19713396-19713563)
chr5 (64-268)||(39539673-39539880)
chr5 (65-207)||(28718819-28718960)
chr5 (69-163)||(938385-938477)
chr5 (72-165)||(22546232-22546323)
chr5 (86-165)||(17297876-17297953)
chr5 (140-263)||(938485-938608)
chr5 (86-165)||(17313951-17314029)
[»] scaffold0657 (1 HSPs)
scaffold0657 (58-259)||(3870-4071)
[»] scaffold0433 (1 HSPs)
scaffold0433 (64-268)||(8252-8456)
[»] chr8 (11 HSPs)
chr8 (67-268)||(21941811-21942012)
chr8 (65-268)||(15327367-15327569)
chr8 (65-268)||(15507736-15507938)
chr8 (65-268)||(6095290-6095492)
chr8 (65-268)||(22172629-22172836)
chr8 (71-216)||(28549230-28549376)
chr8 (98-268)||(24644092-24644263)
chr8 (71-253)||(24795853-24796035)
chr8 (65-182)||(29230589-29230706)
chr8 (65-161)||(27660698-27660795)
chr8 (139-268)||(17089214-17089347)
[»] scaffold1199 (1 HSPs)
scaffold1199 (65-268)||(269-472)
[»] scaffold0213 (1 HSPs)
scaffold0213 (64-268)||(4384-4588)
[»] scaffold0220 (1 HSPs)
scaffold0220 (65-268)||(19457-19660)
[»] scaffold0026 (1 HSPs)
scaffold0026 (68-268)||(26357-26557)
[»] chr2 (5 HSPs)
chr2 (78-268)||(22790704-22790896)
chr2 (65-253)||(18620995-18621184)
chr2 (65-263)||(41664914-41665115)
chr2 (67-268)||(27353502-27353696)
chr2 (132-207)||(12298996-12299072)
[»] scaffold1303 (1 HSPs)
scaffold1303 (116-268)||(892-1044)
[»] scaffold0008 (1 HSPs)
scaffold0008 (22-263)||(229199-229445)
[»] scaffold0063 (1 HSPs)
scaffold0063 (65-268)||(6672-6877)
[»] scaffold0039 (1 HSPs)
scaffold0039 (65-268)||(87855-88059)
[»] scaffold0032 (1 HSPs)
scaffold0032 (65-253)||(107107-107295)
[»] scaffold0502 (1 HSPs)
scaffold0502 (86-249)||(209-372)
[»] scaffold1383 (1 HSPs)
scaffold1383 (50-99)||(4-53)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 15606254 - 15606492
Alignment:
Q  30 aatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaa 129  Q
    ||||||||||  | |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15606254 aatgatttaatgataaccggatgctctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaa 15606353  T
Q  130 cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15606354 cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaa 15606453  T
Q  230 tctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  15606454 tctttctgatcacgagcaaagcaaagcagcgatgcctct 15606492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 10578141 - 10578395
Alignment:
Q  15 aacaaatttgaatataatgatttaaccagaaccagatgctctgataccactg-aagggattttaagaggggattttcaaaattttaatcctctttgcgga 113  Q
    |||| ||| ||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  10578141 aacagattcgaatataatgatttaatgaaaaccagatgctctgataccactggaagggattttaagaggggtttttcaaaattttaatcctctttgcgga 10578240  T
Q  114 agaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcaga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578241 agaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcaga 10578340  T
Q  214 acctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  10578341 acctttgtagcagaaatttttctgatcacgagcaaaacaaagcagcgatgcctct 10578395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 15356380 - 15356649
Alignment:
Q  1 catatgaaacattaaacaaatttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaatttta- 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||     
T  15356380 catatgaaacattaaacaaatttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagagaggtttttccaaattttat 15356479  T
Q  100 -atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttac 198  Q
     |||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15356480 aatcctctaagcggaacaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaatcagaaacttaaacactttaagattcatgtgtttac 15356579  T
Q  199 ctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||| ||||    
T  15356580 ctcttgaagagcagaacctttgtagaaaaaatatttctgatcatgagcaaagcaaagcagcgatgcctct 15356649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 63 - 268
Target Start/End: Original strand, 15599742 - 15599947
Alignment:
Q  63 actgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15599742 actgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 15599841  T
Q  163 acagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15599842 acagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 15599941  T
Q  263 gtctct 268  Q
    | ||||    
T  15599942 gcctct 15599947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 67 - 268
Target Start/End: Original strand, 10571427 - 10571629
Alignment:
Q  67 aagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacag 166  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571427 aagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacag 10571526  T
Q  167 aaacttaaacac-tttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtc 265  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10571527 aaacttaaacacttttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcc 10571626  T
Q  266 tct 268  Q
    |||    
T  10571627 tct 10571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 58 - 268
Target Start/End: Complemental strand, 13212654 - 13212444
Alignment:
Q  58 ataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaa 157  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13212654 ataccactgaagggattttaagaggagtttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaa 13212555  T
Q  158 atcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagca 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  13212554 atcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagca 13212455  T
Q  258 gcgatgtctct 268  Q
    |||||| ||||    
T  13212454 gcgatgcctct 13212444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 8491731 - 8491528
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8491731 tgaagggattttaagaggggtttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaat 8491632  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  8491631 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 8491532  T
Q  265 ctct 268  Q
    ||||    
T  8491531 ctct 8491528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 16481318 - 16481521
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16481318 tgaagggattttaagaggggtttttcaaaatttaaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaat 16481417  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16481418 aaaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgc 16481517  T
Q  265 ctct 268  Q
    ||||    
T  16481518 ctct 16481521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 6111446 - 6111244
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6111446 tgaagggattttaagagggt-ttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatgttgattaaatcattaatcacaaatcaaac 6111348  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  6111347 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 6111248  T
Q  265 ctct 268  Q
    ||||    
T  6111247 ctct 6111244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 13258892 - 13258689
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13258892 tgaagggattttaagaggggtttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 13258793  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  13258792 agaaacttaaacattttaagattcatgtgtttacctcttgaagagtagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 13258693  T
Q  265 ctct 268  Q
    ||||    
T  13258692 ctct 13258689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 13518156 - 13517953
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13518156 tgaagggattttaagaggggtttttcaaaattttattcctctttgcagaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaatc 13518057  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  13518056 agaaacttaaacactttaagattcatgtgtttacctcttgaaaagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 13517957  T
Q  265 ctct 268  Q
    ||||    
T  13517956 ctct 13517953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 17780025 - 17780226
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17780025 tgaagggattttaagagggg-ttttcaaaattttaatcctctttgcggaagaaatcccat-gaaacggatcttgattaaatcattaatcacaaatcaaac 17780122  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||     
T  17780123 agaaacttaaacacttaaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaaccaaagcagcgatgc 17780222  T
Q  265 ctct 268  Q
    ||||    
T  17780223 ctct 17780226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 19081326 - 19081527
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19081326 tgaagggattttaagagggg-ttttcaaaattttaatcctctttgcggaagaaatcccat-gaaacggatcttgattaaatcattaatcacaaatcaaac 19081423  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||     
T  19081424 agaaacttaaacacttaaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaaccaaagcagcgatgc 19081523  T
Q  265 ctct 268  Q
    ||||    
T  19081524 ctct 19081527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 18538342 - 18538139
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |||     
T  18538342 tgaagggattttaagagagatttttcaaaattttaatcctctttacagaagaaatctcattgaaacggatcttgattaaatcattaatcacaaattaaat 18538243  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18538242 agaaacttaaacactttaagattcatgtgtttatctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgc 18538143  T
Q  265 ctct 268  Q
    ||||    
T  18538142 ctct 18538139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 15341077 - 15341282
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    ||||||||||||||||| || ||||| ||||||||  |||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15341077 tgaagggattttaagagaggtttttccaaattttataatcctctaagcggaacaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 15341176  T
Q  163 acagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 262  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  15341177 tcagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaaaaaatatttctgatcacgagcaaagcaaagcagcgat 15341276  T
Q  263 gtctct 268  Q
    | ||||    
T  15341277 gcctct 15341282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 13692029 - 13691871
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13692029 tgaagggatttgaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcatac 13691930  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13691929 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 13691871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 262
Target Start/End: Original strand, 1646363 - 1646553
Alignment:
Q  74 tttaagaggggattttcaaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaact 171  Q
    |||||||| || ||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1646363 tttaagagaggtttttcaaaattttataatcctcttagcggaacaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaact 1646462  T
Q  172 taaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 262  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||| ||||||    
T  1646463 taaacactttaagattaatgtgtttacctcttgaagagcagaacctttgtagaataaatatttctaatcacgagcaaagcaaagtagcgat 1646553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 18534984 - 18534825
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||  ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  18534984 tgaagggattttaagagggatttttcaaaattttaatcctctttacagaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaat 18534885  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18534884 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagc 18534825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 74 - 268
Target Start/End: Original strand, 23014210 - 23014406
Alignment:
Q  74 tttaagaggggattttcaaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaact 171  Q
    |||||||| || ||||||||||||||  |||||||| |||||| || ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23014210 tttaagagaggtttttcaaaattttataatcctcttagcggaacaattcccattgaaacatatcttgattaaatcattaatcacaaatcaaacagaaact 23014309  T
Q  172 taaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||| ||| ||||||||||||||||||||| |||||||||||    
T  23014310 taaacactttaagattcatgtgtttacctcttgaagaacagaacctttgtataagaaatatttatgatcacgagcaaagcaaagcggcgatgtctct 23014406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 32055274 - 32055433
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    ||||||||||| ||||| || ||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32055274 tgaagggattt-aagagaggtttttcaaaattttataatcctctttgcggaagaaattccattgaaacggatcttgattaaatcattaatcacaaatcaa 32055372  T
Q  163 acagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 223  Q
    | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32055373 atagaaattgaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 32055433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 16201566 - 16201363
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||| |||||||  || |||||||||||||||||||||| ||| ||||||||||||  ||||| |||||||||||||||||| |||||||||||||    
T  16201566 tgaagggaatttaagaaaggtttttcaaaattttaatcctcttagcgaaagaaatcccatgaaaacgaatcttgattaaatcattactcacaaatcaaac 16201467  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    | ||||||||||| ||||||| | ||||||||||||| | ||||| ||||||||||||||| |||| |||||||||||||| |||||||||||| ||||     
T  16201466 aaaaacttaaacattttaagagtaatgtgtttacctcctaaagagtagaacctttgtagcataaatgtttctgatcacgagaaaagcaaagcagtgatgc 16201367  T
Q  265 ctct 268  Q
    ||||    
T  16201366 ctct 16201363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 12564493 - 12564395
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12564493 tgaagggattttaagaggggtttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 12564395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 25801436 - 25801352
Alignment:
Q  169 acttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaa 253  Q
    ||||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||| | |||||||| |||||||||||||    
T  25801436 acttaaacatttaaagattcatgtgtttacctcttgaagcgcataacctttgtagcagaattgtttctgattacgagcaaagcaa 25801352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 6288184 - 6288288
Alignment:
Q  70 ggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaa 169  Q
    ||||||||| ||||| |||||||||||||||||||||| |  ||| ||||| |  || |||||||||||||||||||||||||||||||| |||||  ||    
T  6288184 ggattttaaaaggggtttttcaaaattttaatcctcttagtagaataaatctcgatg-aacggatcttgattaaatcattaatcacaaattaaacaacaa 6288282  T
Q  170 cttaaa 175  Q
    ||||||    
T  6288283 cttaaa 6288288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 32056056 - 32056108
Alignment:
Q  216 ctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32056056 ctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctct 32056108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 17196702 - 17196749
Alignment:
Q  131 ggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacac 178  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17196702 ggatcttgattaaatcattaatcacaaatcaaacaaaaacttaaacac 17196749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 25801508 - 25801443
Alignment:
Q  65 tgaagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaatcccattgaaa 129  Q
    ||||||||||| |||||||| |||| |||||||||||||||||| | |||| ||||||||||||||    
T  25801508 tgaagggatttaaagaggggttttttcaaaattttaatcctcttagtggaacaaatcccattgaaa 25801443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 47699511 - 47699607
Alignment:
Q  69 gggattttaagagggg-attttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaaca 165  Q
    ||||||| |||||||| |||||| |||||||||||||||| | |||| |||| ||| | | |||| |||||||||| |||||||||| ||||||||||    
T  47699511 gggatttcaagaggggtattttccaaattttaatcctcttagaggaataaattccaat-agacgggtcttgattaagtcattaatcataaatcaaaca 47699607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 17196750 - 17196806
Alignment:
Q  207 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||||| ||| ||||    
T  17196750 gagcagaacctttgtagaagaaatatttctgatcacgagtaaagcaaaacagtgatg 17196806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 17690256 - 17690503
Alignment:
Q  20 atttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaat 119  Q
    ||||||||  |||||||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17690256 atttgaatcaaatgatttaatcacaacc-gatgctctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 17690354  T
Q  120 cccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaaccttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690355 cccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaaccttt 17690454  T
Q  220 gtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  17690455 gtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctct 17690503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 29310276 - 29310034
Alignment:
Q  24 gaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatccca 123  Q
    |||| ||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29310276 gaatttaatgatttaatcagaaccag--gctctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatccca 29310179  T
Q  124 ttgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 223  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29310178 atgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 29310079  T
Q  224 cagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
     |||||| |||||||||||||||||||||||||||| ||| ||||    
T  29310078 aagaaatatttctgatcacgagcaaagcaaagcagctatgcctct 29310034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 27298050 - 27297803
Alignment:
Q  20 atttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaat 119  Q
    ||||||||  |||||||||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  27298050 atttgaatcaaatgatttaatcacaacc-gatgctctgataccactgaagggattttaagaggggtttttcaaaatattaatcctctttgcggaagaaat 27297952  T
Q  120 cccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaaccttt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27297951 cccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcacgtgtttacctcttgaagagcagaaccttt 27297852  T
Q  220 gtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||| |||||| ||||| |||||||||||||||||||||||||| ||||    
T  27297851 gtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctct 27297803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 27380082 - 27380290
Alignment:
Q  60 accactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaat 159  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27380082 accactgaagggattttaagaggggtttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaat 27380181  T
Q  160 caaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagc 259  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  27380182 caaatagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagc 27380281  T
Q  260 gatgtctct 268  Q
    |||| ||||    
T  27380282 gatgcctct 27380290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 27470465 - 27470673
Alignment:
Q  60 accactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaat 159  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27470465 accactgaagggattttaagaggggtttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaat 27470564  T
Q  160 caaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagc 259  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  27470565 caaatagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagc 27470664  T
Q  260 gatgtctct 268  Q
    |||| ||||    
T  27470665 gatgcctct 27470673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 29317196 - 29316993
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29317196 tgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccaatgaaacggatcttgattaaatcattaatcacaaatcaaac 29317097  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||     
T  29317096 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagctatgc 29316997  T
Q  265 ctct 268  Q
    ||||    
T  29316996 ctct 29316993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 27278716 - 27278511
Alignment:
Q  63 actgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278716 actgaagggattttaagaggggtttttcaaaatattaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 27278617  T
Q  163 acagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 262  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  27278616 acagaaacttaaacactttaagattcacgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctaatcacgagcaaagcaaagcagcgat 27278517  T
Q  263 gtctct 268  Q
    | ||||    
T  27278516 gcctct 27278511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 27303607 - 27303402
Alignment:
Q  63 actgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303607 actgaagggattttaagaggggtttttcaaaatattaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 27303508  T
Q  163 acagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 262  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  27303507 acagaaacttaaacactttaagattcacgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctaatcacgagcaaagcaaagcagcgat 27303408  T
Q  263 gtctct 268  Q
    | ||||    
T  27303407 gcctct 27303402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 11653046 - 11652842
Alignment:
Q  64 ctgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11653046 ctgaagggattttaagagggttttttcaaaattttaatcctctttgcggaagaaatcccattgaaacgaatcttgattaaatcattaatcacaaatcaaa 11652947  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||    
T  11652946 tagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagtaaagcaaagcagcgatg 11652847  T
Q  264 tctct 268  Q
     ||||    
T  11652846 cctct 11652842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 17683430 - 17683520
Alignment:
Q  178 ctttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  17683430 ctttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatatttctgatcacgagcaaagcaaagcagcgatgcctct 17683520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 18336831 - 18336733
Alignment:
Q  170 cttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||   ||||||||||||    
T  18336831 cttaaacactttaaaattcatgtgtttacctcttgaagagcagaacctttgtagcataaatgtttctgatcacaagcaaagcaacatagcgatgtctct 18336733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 268
Target Start/End: Original strand, 28755124 - 28755318
Alignment:
Q  74 tttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaat-cacaaatcaaacagaaactt 172  Q
    ||||||||||  ||||||||||||||||| |||| |||||| |||| ||| |||||| |||||||||||||||| ||||  | |||| ||| | | | ||    
T  28755124 tttaagagggatttttcaaaattttaatcatcttggcggaacaaattccactgaaacagatcttgattaaatcactaataaaaaaattaaatacataatt 28755223  T
Q  173 aaacactttaa-gattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||| ||||| |||||| ||||||||||||||||  ||||||||||  | ||| || | |||||||||||||||||| ||||| ||| ||||||||    
T  28755224 aaacattttaaggattcacgtgtttacctcttgaatcgcagaacctt--ttgcataattgtttctgatcacgagcaaatcaaagtagcaatgtctct 28755318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 16393328 - 16393442
Alignment:
Q  54 tctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaa-cggatcttgattaaatcattaat 152  Q
    ||||||||||||||||||||||| ||||| | ||||||||| |||| ||||||| |||| | ||||| |||||||| |||||||| ||||||||||||||    
T  16393328 tctgataccactgaagggattttgagaggagtttttcaaaaattta-tcctcttagcggtacaaatctcattgaaaacggatctttattaaatcattaat 16393426  T
Q  153 cacaaatcaaacagaa 168  Q
    |||||||||| |||||    
T  16393427 cacaaatcaaccagaa 16393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 2670091 - 2670013
Alignment:
Q  132 gatcttgattaaatcattaatcacaaatcaa--acagaaacttaaacactttaa-gattcatgtgtttacctcttgaag 207  Q
    ||||||||||||||| ||||||| |||||||  ||| | ||||||||||||||| |||| | |||||||| ||||||||    
T  2670091 gatcttgattaaatcgttaatcaaaaatcaaacacatatacttaaacactttaaggatttacgtgtttacatcttgaag 2670013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 19346305 - 19346339
Alignment:
Q  131 ggatcttgattaaatcattaatcacaaatcaaaca 165  Q
    |||||||||||||| ||||||||||||||||||||    
T  19346305 ggatcttgattaaaccattaatcacaaatcaaaca 19346339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 29000 - 29247
Alignment:
Q  18 aaatttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaa 117  Q
    |||||||||| |||||||| || || |||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29000 aaatttgaatttaatgattcaatcacaacc-gaagctctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaa 29098  T
Q  118 atcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  29099 atcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattc--gtgtttacctcttgaagagcagaacct 29196  T
Q  218 ttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29197 ttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctct 29247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 26964965 - 26964715
Alignment:
Q  16 acaaatttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaag 115  Q
    |||||||||||| ||||||||||| |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  26964965 acaaatttgaatttaatgatttaatcgaaaccaagtgctctgataccactgaagggattttaagaggggtttttcaaaattttaatcctct--gcggaag 26964868  T
Q  116 aaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaac 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964867 aaatcccattgaaaccgatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaac 26964768  T
Q  216 ctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  26964767 ctttgtagcataaatctttctgatcacgagcaaagcaaagcagcgatgcctct 26964715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 18263596 - 18263356
Alignment:
Q  29 taatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaatcccattga 127  Q
    ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18263596 taatgatttaatcaaaaccagaagctctgataccactgaagggattttaagaggggttttttcaaaattttaatcctctttgcggaagaaatcccattga 18263497  T
Q  128 aacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcaga 227  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  18263496 aacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattcatgtgtttacctcttgacgagcagaacctttgtagaaga 18263397  T
Q  228 aatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||| |||||||||||||||||||||||||||||||| ||||    
T  18263396 aatatttctgatcacgagcaaagcaaagcagcgatgcctct 18263356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 10620167 - 10620371
Alignment:
Q  64 ctgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10620167 ctgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacagatcttgattaaatcattaatcacaaatcaaa 10620266  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10620267 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctctgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 10620366  T
Q  264 tctct 268  Q
     ||||    
T  10620367 cctct 10620371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 5708729 - 5708481
Alignment:
Q  20 atttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctct--ttgcggaagaa 117  Q
    ||||||||  |||||||||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||    
T  5708729 atttgaatcaaatgatttaatcacaacc-gatgctctgataccactgaagggattttaagagggg-ttttcaaaattttaatcctctctttgtggaagaa 5708632  T
Q  118 atcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5708631 atcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaatct 5708532  T
Q  218 ttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||  |||||| |||||||||||||||||||||||||||||||| ||||    
T  5708531 ttgtataagaaatatttctgatcacgagcaaagcaaagcagcgatgcctct 5708481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 5715320 - 5715117
Alignment:
Q  64 ctgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5715320 ctgaagggattttaagagggg-ttttcaaaattttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaa 5715222  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  5715221 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatg 5715122  T
Q  264 tctct 268  Q
     ||||    
T  5715121 cctct 5715117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 8859540 - 8859336
Alignment:
Q  65 tgaagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859540 tgaagggattttaagagggggtttttcaaaattttaatcctctttccgaaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 8859441  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859440 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 8859341  T
Q  264 tctct 268  Q
     ||||    
T  8859340 cctct 8859336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 28392002 - 28392205
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28392002 tgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaac 28392101  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  28392102 agaaacttaaacactttaagattcatatgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 28392201  T
Q  265 ctct 268  Q
    ||||    
T  28392202 ctct 28392205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 55614055 - 55613852
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  55614055 tgaagggattttaagaggggtttttcaaaatttaaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaat 55613956  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  55613955 aaaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgc 55613856  T
Q  265 ctct 268  Q
    ||||    
T  55613855 ctct 55613852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 26971811 - 26971609
Alignment:
Q  64 ctgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26971811 ctgaagggattttaagaggggtttttcaaaattttaatcctct--gcggaagaaatcccattgaaaccgatcttgattaaatcattaatcacaaatcaaa 26971714  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26971713 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcataaatctttctgatcacgagcaaagcaaagcagcgatg 26971614  T
Q  264 tctct 268  Q
     ||||    
T  26971613 cctct 26971609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 10825188 - 10825390
Alignment:
Q  64 ctgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10825188 ctgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaataaatcccattgaaacagatcttgattaaatcattaatcacaaatcaaa 10825287  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10825288 cagaaacttaaacacttta--attcatgtgtttacctcttgaagagcagaacctctgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 10825385  T
Q  264 tctct 268  Q
     ||||    
T  10825386 cctct 10825390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 68 - 268
Target Start/End: Original strand, 20579275 - 20579475
Alignment:
Q  68 agggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacaga 167  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20579275 agggattttaagaggggtttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaataga 20579374  T
Q  168 aacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctc 267  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||    
T  20579375 aacttaaacactttaagattcatgtgtttacctcttgaagagtagaacctttgtagaagaaataattctgatcacgagcaaagcaaagcagcgatgcctc 20579474  T
Q  268 t 268  Q
    |    
T  20579475 t 20579475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 67 - 268
Target Start/End: Complemental strand, 18270419 - 18270217
Alignment:
Q  67 aagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaaca 165  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18270419 aagggattttaagaggggttttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaata 18270320  T
Q  166 gaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtc 265  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |    
T  18270319 gaaacttaaacactttaagattcatgtgtttacctcttgacgagcagaacctttatagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcc 18270220  T
Q  266 tct 268  Q
    |||    
T  18270219 tct 18270217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 869968 - 869765
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  869968 tgaagggattttaagagggatttttcaaaaatttaattctctttgcggaagaaatcctattgaaacggatcttgattaaatcattaatcacaaatcaaat 869869  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||     
T  869868 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacatttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 869769  T
Q  265 ctct 268  Q
    ||||    
T  869768 ctct 869765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 19925562 - 19925798
Alignment:
Q  30 aatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaa 129  Q
    |||||||||| || |||| || ||||||||||||||| |||||||| || ||||  ||||||||| |||||||||||||||||||||||||||| | |||    
T  19925562 aatgatttaatcataacc-gaagctctgataccactgtagggatttaaa-agggatttttcaaaaatttaatcctctttgcggaagaaatcccaataaaa 19925659  T
Q  130 cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  19925660 cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcacaacctttgtagaagaaa 19925759  T
Q  230 tctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    | |||||||||||||||||||||||||||| ||| ||||    
T  19925760 tatttctgatcacgagcaaagcaaagcagcaatgcctct 19925798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 86 - 268
Target Start/End: Original strand, 19919387 - 19919569
Alignment:
Q  86 ttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaaga 185  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19919387 ttttcaaaaatttaatcctctttgcggaagaaatcccaatgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaaga 19919486  T
Q  186 ttcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  19919487 ttcatgtgtttacctcttgaagagcacaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctct 19919569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 10676371 - 10676627
Alignment:
Q  14 aaacaaatttgaatataatgatttaaccagaaccagatgctctgataccac--tgaagggattttaagaggggattttcaaaattttaatcctctttgcg 111  Q
    ||||| ||||||||  | |||||||| |||||||||  |||||||||||||  ||||||||||| |||||||  |||||||| ||||||||||||| |||    
T  10676371 aaacagatttgaattaattgatttaatcagaaccag--gctctgataccacattgaagggatttaaagagggttttttcaaatttttaatcctcttagcg 10676468  T
Q  112 gaagaaatcccattgaaa-cgga-tcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagag 209  Q
    ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||    
T  10676469 gaacaaatcccattgaaaacggaatcttgattaaatcattaatcacaaatcaaacacaaacttaaacacttacgaattcatgtgtttacctcttgaagag 10676568  T
Q  210 cagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
     ||||||||||||||| || | ||||||||||||||||||| || | ||||||| ||||    
T  10676569 aagaacctttgtagcataattgtttctgatcacgagcaaagtaacgtagcgatgcctct 10676627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 10890011 - 10890267
Alignment:
Q  14 aaacaaatttgaatataatgatttaaccagaaccagatgctctgataccac--tgaagggattttaagaggggattttcaaaattttaatcctctttgcg 111  Q
    ||||| ||||||||  | |||||||| |||||||||  |||||||||||||  ||||||||||| |||||||  |||||||| ||||||||||||| |||    
T  10890011 aaacagatttgaattaattgatttaatcagaaccag--gctctgataccacattgaagggatttaaagagggttttttcaaatttttaatcctcttagcg 10890108  T
Q  112 gaagaaatcccattgaaa-cgga-tcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagag 209  Q
    ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||    
T  10890109 gaacaaatcccattgaaaacggaatcttgattaaatcattaatcacaaatcaaacacaaacttaaacacttacgaattcatgtgtttacctcttgaagag 10890208  T
Q  210 cagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
     ||||||||||||||| || | ||||||||||||||||||| || | ||||||| ||||    
T  10890209 aagaacctttgtagcataattgtttctgatcacgagcaaagtaacgtagcgatgcctct 10890267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 65 - 253
Target Start/End: Original strand, 47387788 - 47387978
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||    
T  47387788 tgaagggatttcaagaggggtttttcaaaattttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacacatctaac 47387887  T
Q  165 agaaacttaaacactttaag-attcatgtgtttacc-tcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaa 253  Q
    | | | |||| || |||||| ||||||||||||||| |  ||||||||||||||||||||||| || | ||||||||||||||||||||||    
T  47387888 acatatttaagcaatttaagaattcatgtgtttaccttgatgaagagcagaacctttgtagcataattgtttctgatcacgagcaaagcaa 47387978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 4425468 - 4425678
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattt-taatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||| ||||| || |||||||| ||| |||||||||  |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4425468 tgaagggattt-aagagaggtttttcaaattttataatcctctaagcggaacaaatctcattgaaacagatcttgattaaatcattaatcacaaatcaaa 4425566  T
Q  164 cagaaacttaaacactttaagat-------tcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagc 256  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||| |||| ||||||| |||||| ||||| |||||||||||||||||||    
T  4425567 cagaaacttaaacactttaagattatgtcatcatgtgtttacctcttgaagagctgaacttttgtagaagaaatatttctaatcacgagcaaagcaaagc 4425666  T
Q  257 agcgatgtctct 268  Q
    ||||||| ||||    
T  4425667 agcgatgcctct 4425678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 10627240 - 10627453
Alignment:
Q  30 aatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaa 129  Q
    |||||||||| || |||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||              
T  10627240 aatgatttaatcataacc-gaagctctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcgtaagaaat---------- 10627327  T
Q  130 cggatcttgattaaatcattaatcacaaatcaaacagaaa-cttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaa 228  Q
            |||||||||||||||||||||||||||||||| ||||||||||||      |||||||||||||||||||||||||||||| ||||||||||    
T  10627328 --------gattaaatcattaatcacaaatcaaacagaaaacttaaacacttt------catgtgtttacctcttgaagagcagaacctctgtagcagaa 10627413  T
Q  229 atctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10627414 atctttctgatcacgagcaaagcaaagcagcgatgcctct 10627453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 65 - 253
Target Start/End: Complemental strand, 35224903 - 35224711
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccatt-----gaaacggatcttgattaaatcattaatcacaaat 159  Q
    ||||||||||| |||||||| |||||||||||||||||||||   ||||| ||||||||||     ||||||||||||||||||||||| ||||||||||    
T  35224903 tgaagggatttcaagagggggttttcaaaattttaatcctctcaacggaataaatcccattaaaatgaaacggatcttgattaaatcatcaatcacaaat 35224804  T
Q  160 caaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaa 253  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||||| ||  | ||||||||||||||||||||||    
T  35224803 caaacacaaacttaaacactttaa-attcatgtgtttacctcttgaagcgcagaaattttgtagccgagttgtttctgatcacgagcaaagcaa 35224711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 5667049 - 5667192
Alignment:
Q  86 ttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaa-g 184  Q
    |||||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |    
T  5667049 ttttcaaaattttaatgctctctgcggaagaaatcttattgaaacggatcttgattaaatcattaatcacaaatcaaacacatacttaaacaatttaagg 5667148  T
Q  185 attcatgtgtttacctcttgaagagcagaacctttgtagcagaa 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  5667149 attcatgtgtttacctcttgaagagcagaacctttgtagtagaa 5667192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 55992971 - 55992821
Alignment:
Q  87 tttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag-a 185  Q
    ||||||||||||||||||||| ||  || ||||| |||| ||||||||||||||||||        ||| ||| ||||| | ||||||| |||||||| |    
T  55992971 tttcaaaattttaatcctcttagcaaaacaaatctcattaaaacggatcttgattaaa--------cactaattaaacacatacttaaatactttaagaa 55992880  T
Q  186 ttcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacga 244  Q
    || || |||||||||||||||  | |||||| ||||| || || | |||||||||||||    
T  55992879 ttaatatgtttacctcttgaaacgtagaaccattgtaccaaaagtgtttctgatcacga 55992821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 27031816 - 27031782
Alignment:
Q  169 acttaaacactttaagattcatgtgtttacctctt 203  Q
    |||||||||||||||||||||||||||||||||||    
T  27031816 acttaaacactttaagattcatgtgtttacctctt 27031782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 49066044 - 49066009
Alignment:
Q  127 aaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    ||||| ||||||||||||||||||||||||||||||    
T  49066044 aaacgaatcttgattaaatcattaatcacaaatcaa 49066009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 10035 - 10275
Alignment:
Q  29 taatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaatcccattga 127  Q
    ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  10035 taatgatttaatcaaaaccagaagctctgataccactgaagggattttaagaggggttttttcaaaattttaatcctctttgcggaagaaatcccattga 10134  T
Q  128 aacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcaga 227  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  10135 aacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattcatgtgtttacctcttgacgagcagaacctttgtagaaga 10234  T
Q  228 aatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||| |||||||||||||||||||||||||||||||| ||||    
T  10235 aatatttctgatcacgagcaaagcaaagcagcgatgcctct 10275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 1177 - 1382
Alignment:
Q  64 ctgaagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1177 ctgaagggattttaagaggggttttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 1276  T
Q  163 acagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 262  Q
      ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  1277 ttagaaacttaaacactttaagattcatgtgtttacctcttgacgagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgat 1376  T
Q  263 gtctct 268  Q
    | ||||    
T  1377 gcctct 1382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 34 - 268
Target Start/End: Original strand, 5025 - 5259
Alignment:
Q  34 atttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacgga 133  Q
    |||||| || |||||||||||||||||||||||| ||||| || ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  5025 atttaatcacaaccagatgctctgataccactgatgggatatttagaggggttttttaaaattttaatcctctttgcggaagaaatcccaatgaaacgga 5124  T
Q  134 tcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  5125 tcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatt 5224  T
Q  234 tctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||||||||||||||||||| ||||    
T  5225 tctgatcacgagcaaagcaaagcagcgatgcctct 5259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 11541827 - 11542037
Alignment:
Q  52 gctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaa 151  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11541827 gctctgataccactgaagggattttaagagggttttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaa 11541926  T
Q  152 tcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagc 251  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11541927 tcacaaatcaaatagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagtagaaatctttctgatcacgagcaaagc 11542026  T
Q  252 aaagcagcgat 262  Q
    |||||||||||    
T  11542027 aaagcagcgat 11542037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 2652852 - 2653051
Alignment:
Q  69 gggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaa 168  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2652852 gggattttaagaggggtttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaa 2652951  T
Q  169 acttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2652952 acttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctct 2653051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 29329135 - 29328932
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29329135 tgaagggattttaagaggggattttcaaaattttaatcctctttgcagaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 29329036  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  29329035 agaaacttaaacattttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 29328936  T
Q  265 ctct 268  Q
    ||||    
T  29328935 ctct 29328932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 11534921 - 11535125
Alignment:
Q  65 tgaagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11534921 tgaagggattttaagaggggttttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcataaatcaaa 11535020  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11535021 tagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagtagaaatctttctgatcacgagcaaagcaaagcagcgatg 11535120  T
Q  264 tctct 268  Q
    |||||    
T  11535121 tctct 11535125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 65 - 273
Target Start/End: Complemental strand, 12752206 - 12751998
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||     
T  12752206 tgaatggattttaagaggggtttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttaattaaatcattaatcaaaaatcaaaa 12752107  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  12752106 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 12752007  T
Q  265 ctctgctcc 273  Q
    |||| ||||    
T  12752006 ctctactcc 12751998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 12739932 - 12739686
Alignment:
Q  20 atttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaa 118  Q
    ||||||||  |||||||||| || ||||| ||||||| |||||||| |||||||||||||||||| |||| | |||||||||| ||||||||||||||||    
T  12739932 atttgaattgaatgatttaatcacaacca-atgctctaataccacttaagggattttaagaggggttttttcgaaattttaattctctttgcggaagaaa 12739834  T
Q  119 tcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctt 218  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12739833 tcctattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattc--gtgtttacctcttgaagagcagaacctt 12739736  T
Q  219 tgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  12739735 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctct 12739686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 15153817 - 15153612
Alignment:
Q  63 actgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15153817 actgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattactcacaaatcaa 15153718  T
Q  163 acagaaacttaaacacttt-aagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcga 261  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||    
T  15153717 acagaaatttaaacactttaaagattcatgtgtttacctcttgaagagcagaacctttgtag-aaaaatatttctgatcacgagcaaagcaaagaagcga 15153619  T
Q  262 tgtctct 268  Q
    || ||||    
T  15153618 tgcctct 15153612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 18562385 - 18562177
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18562385 tgaagggattttaagaggggtttttcaaaattttaatactctttgaggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaac 18562286  T
Q  165 agaaacttaaacactttaa-----gattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagc 259  Q
    | | |||||||||||||||     ||||||| |||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||| ||||    
T  18562285 acatacttaaacactttaattaaggattcatttgtttacctcttgaagagcagaacctttgtagtagaattatttttgatcacgagcaaagcaaaacagc 18562186  T
Q  260 gatgtctct 268  Q
    |||| ||||    
T  18562185 gatgcctct 18562177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 9979174 - 9978972
Alignment:
Q  68 agggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaa-cggatcttgattaaatcattaatcacaaatcaaacag 166  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  9979174 agggattttaagaggggtttttgaaaattttaatcctctttgcggaagaaatcccattgaaaacggatcttgattaaatcattaatcacaaatcaaacac 9979075  T
Q  167 aaacttaaacactttaag-attcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtc 265  Q
    | ||||||| | |||||| |||||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||||||||  ||||||| |    
T  9979074 atacttaaataatttaaggattcatgtgttttcctcttgaagagcagaacctttgtagtagaactatttctgatcacgagcaaagcaaaatagcgatgcc 9978975  T
Q  266 tct 268  Q
    |||    
T  9978974 tct 9978972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 11557060 - 11557199
Alignment:
Q  50 atgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcatt 149  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||    
T  11557060 atgctctgataccactgaagggattttaagagggggtttttaaaattttaaccgtctttgcggaagaaatctcattgaaacggatcttgattaaatcatt 11557159  T
Q  150 aatcacaaatcaaacagaaacttaaacactttaagattca 189  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11557160 aatcacaaatcaaacagaaacttaaacactttaagattca 11557199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 67 - 262
Target Start/End: Original strand, 18256679 - 18256875
Alignment:
Q  67 aagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacag 166  Q
    ||||||||| |||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18256679 aagggatttaaagaggggtttttcaaaaatttaatcctcttagcggaacaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacac 18256778  T
Q  167 aaacttaaacacttta-agattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 262  Q
    | ||||||||| ||||  ||||||||||||| |||||||||||| ||||| ||||||| |||  | |||||||||||||||||||||| | ||||||    
T  18256779 atacttaaacaatttagggattcatgtgtttgcctcttgaagagaagaacttttgtagtagagttatttctgatcacgagcaaagcaacgtagcgat 18256875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 30926378 - 30926254
Alignment:
Q  131 ggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacacttt-aag-attcatgtgtttacctcttgaagagcagaacctttgtagcagaa 228  Q
    ||||| ||||||||||||||||| ||||||||||| | | ||| ||||||| ||| || |||||||||||||||| ||  ||| ||||||||||||||||    
T  30926378 ggatcatgattaaatcattaatcgcaaatcaaacacatatttatacacttttaagcatccatgtgtttacctcttaaatcgcaaaacctttgtagcagaa 30926279  T
Q  229 atctttctgatcacgagcaaagcaa 253  Q
       ||| ||||||| ||||||||||    
T  30926278 tcgtttttgatcacaagcaaagcaa 30926254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 7748248 - 7748213
Alignment:
Q  128 aacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||||||||||||||||||||||||||    
T  7748248 aacggatcttgattaaatcattaatcacaaatcaaa 7748213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 22947653 - 22947697
Alignment:
Q  140 ttaaatcattaatcacaaatcaaacagaaacttaaacactttaag 184  Q
    |||||||||||||||||||||||||||| | |||||| |||||||    
T  22947653 ttaaatcattaatcacaaatcaaacagataattaaaccctttaag 22947697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 30918068 - 30918034
Alignment:
Q  128 aacggatcttgattaaatcattaatcacaaatcaa 162  Q
    |||||||| ||||||||||||||||||||||||||    
T  30918068 aacggatcatgattaaatcattaatcacaaatcaa 30918034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 18253388 - 18253174
Alignment:
Q  54 tctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatc 153  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  18253388 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcagaagaaatcccattgaaacggatcttgattaaattattaatc 18253289  T
Q  154 acaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  18253288 acaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaa 18253189  T
Q  254 agcagcgatgtctct 268  Q
    |||||||||| ||||    
T  18253188 agcagcgatgcctct 18253174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 68 - 268
Target Start/End: Original strand, 18531376 - 18531576
Alignment:
Q  68 agggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacaga 167  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18531376 agggattttaagagggatttttcaaaattttaatcctctttgcggaagaaatcccaatgaaacggatcttgattaaatcattaatcacaaatcaaacaga 18531475  T
Q  168 aacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctc 267  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||    
T  18531476 aacttaaacactttaagattcatgtgtttacctcttgaagagtagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctc 18531575  T
Q  268 t 268  Q
    |    
T  18531576 t 18531576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 27130257 - 27130443
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27130257 tgaaaggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 27130356  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagc 251  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27130357 agaaacttaaacactttaagattcatgtgattacctcttgaagagcagaacctttgtagcataaatctttctgatcacgagcaaagc 27130443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 63 - 268
Target Start/End: Original strand, 27309410 - 27309616
Alignment:
Q  63 actgaagggattttaagaggggatttt-caaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatca 161  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  27309410 actgaagggattttaagagggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacaaatattgattaaatcattaatcacaaatca 27309509  T
Q  162 aacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcga 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  27309510 aacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcaaaacctttgtagaagaaatatttctgatcacgagcaaagcaaagtagcga 27309609  T
Q  262 tgtctct 268  Q
    || ||||    
T  27309610 tgcctct 27309616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 74 - 268
Target Start/End: Original strand, 16357900 - 16358097
Alignment:
Q  74 tttaagaggggattttcaaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaact 171  Q
    |||||||| || ||||||||||||||  |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16357900 tttaagagaggtttttcaaaattttataatcctcttagcggaacaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaatt 16357999  T
Q  172 taaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacg-agcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| || |||| |||||||||||| ||||    
T  16358000 taaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttatgatcacgaagaaaagaaaagcagcgatgcctct 16358097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 21169283 - 21169472
Alignment:
Q  65 tgaagggattttaagagggga-ttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21169283 tgaagggattttaagaggggggttttcaaaattttgatcctctttgcggaagaaatcccattgaaaaggatcttgattaaatcattaatcacaaatcaaa 21169382  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    ||||||                |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  21169383 cagaaa---------------tttcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcaacgatg 21169467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 85 - 268
Target Start/End: Original strand, 22640727 - 22640914
Alignment:
Q  85 attttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaa-----acttaaacact 179  Q
    |||||||||||||||||| |||| |||||| |||||||||| ||| |||||||||||||||||||||||| |||| || || ||     |||||||||||    
T  22640727 attttcaaaattttaatc-tcttagcggaacaaatcccattaaaatggatcttgattaaatcattaatcataaattaatcaaaacacatacttaaacact 22640825  T
Q  180 ttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||  |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||| | ||||||| ||||    
T  22640826 ttaaggatcatgtgtttacctcttgaagcacagaacctttgtagcagaattgtttctgatcacgagcaaagcaacgtagcgatgcctct 22640914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 260
Target Start/End: Original strand, 9075750 - 9075932
Alignment:
Q  64 ctgaagggattttaagaggggattttcaaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatca 161  Q
    |||||||||||| |||||||| ||||||||||||||  |||||||| |||||| ||||| ||||||||||| |||||||||||  |||||||||||||||    
T  9075750 ctgaagggatttaaagaggggtttttcaaaattttataatcctcttagcggaacaaatctcattgaaacgggtcttgattaaagaattaatcacaaatca 9075849  T
Q  162 aacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcg 260  Q
    ||                ||| ||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||    
T  9075850 aa----------------ttacgattcatgtgtttacctcttgaagagcagaatctttgtagaagaattatttctgatcacgagcaaagcaaagcagcg 9075932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 25662370 - 25662281
Alignment:
Q  73 ttttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    |||||||||||| ||||||||||||| ||  | || |||||| |||||||  |||| ||||| ||||||||||||||||||||||||||||    
T  25662370 ttttaagaggggtttttcaaaattttcattttgttagcggaataaatcccgatgaa-cggatattgattaaatcattaatcacaaatcaaa 25662281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 9915730 - 9915825
Alignment:
Q  69 gggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaaca 165  Q
    ||||||| || ||||||||||||||||||||||||| || |||||| ||||||   || || || |||| ||||||| |||||||||||||||||||    
T  9915730 gggatttcaataggggattttcaaaattttaatccttttagcggaataaatcctgatg-aatgggtcttaattaaattattaatcacaaatcaaaca 9915825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 10155022 - 10155086
Alignment:
Q  20 atttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagagggg 84  Q
    |||||||| ||||||||||| |||||||| ||||| ||||||| ||| ||||||| |||||||||    
T  10155022 atttgaatctaatgatttaatcagaaccaaatgctatgataccgctgtagggattgtaagagggg 10155086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 12748 - 12988
Alignment:
Q  29 taatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaa-ttttaatcctctttgcggaagaaatcccattga 127  Q
    ||||||||||| || ||||| | ||||||||||||||| ||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||| |    
T  12748 taatgatttaatcataaccaaaagctctgataccactgtagggattttgagagaggtttttcaaaaattttaatcctctttgcggaagaaatcccattaa 12847  T
Q  128 aacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcaga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12848 aacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcaga 12947  T
Q  228 aatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  12948 aatctttctcatcacgagcaaagcaaagcagcgatgcctct 12988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 107 - 268
Target Start/End: Original strand, 5811 - 5972
Alignment:
Q  107 ttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaa 206  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5811 ttgcggaagaaatcccattaaaacggatcttgattaaattattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcctgaa 5910  T
Q  207 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5911 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctct 5972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7433 - 7675
Alignment:
Q  1 catatgaaacattaaacaaatttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaatttta- 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||     
T  7433 catatgaaacattaaacaaatttgaatataatgatttaaccagaaccagatgctctgataccactgaagggattttaagagaggtttttccaaattttat 7532  T
Q  100 -atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttac 198  Q
     |||||||  |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7533 aatcctctaagcggaacaaatcacattgaaacggatcttgattaaatcattaatcacaaatcaaaaagaaacttaaacactttaagattcatgtgtttac 7632  T
Q  199 ctcttgaagagcagaacctttgtagcagaaatctttctgatca 241  Q
    ||||||||||||||||||||||||| | |||| ||||||||||    
T  7633 ctcttgaagagcagaacctttgtagaaaaaatatttctgatca 7675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 24694286 - 24694523
Alignment:
Q  30 aatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaa 129  Q
    |||||||||| || ||||| | |||||||||||||||||| ||||| |||||| | ||||||  ||||||||||||||| ||||||||||||||||||||    
T  24694286 aatgatttaatcacaaccaaa-gctctgataccactgaagagatttaaagaggtgtttttcatgattttaatcctctttacggaagaaatcccattgaaa 24694384  T
Q  130 cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaa 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694385 cggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaa 24694484  T
Q  230 tctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  24694485 tctttctgatcacgagcaaagcaaagcagcgatgcctct 24694523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 24701055 - 24701276
Alignment:
Q  30 aatgatttaaccagaaccagatgctctgataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaa 129  Q
    |||||||||| || ||||| | |||||||||||||||||| ||||| |||||| | ||||||  ||||||||||||||| ||||||||||||||||||||    
T  24701055 aatgatttaatcacaaccaaa-gctctgataccactgaagagatttaaagaggtgtttttcatgattttaatcctctttacggaagaaatcccattgaaa 24701153  T
Q  130 cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaa 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24701154 cggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaa 24701253  T
Q  230 tctttctgatcacgagcaaagca 252  Q
    |||||||||||||||||||||||    
T  24701254 tctttctgatcacgagcaaagca 24701276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 74 - 261
Target Start/End: Original strand, 18565324 - 18565512
Alignment:
Q  74 tttaagaggggattttcaaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaact 171  Q
    |||||||| || ||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18565324 tttaagagaggtttttcaaaattttataatcctcttagcggaataaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaact 18565423  T
Q  172 taaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcga 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  18565424 taaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag-aaaaatatttctgatcacgagcaaagcaaagcagcga 18565512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 268
Target Start/End: Original strand, 19713396 - 19713563
Alignment:
Q  95 ttttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaa-gattcatgtg 193  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| ||||| ||||||||||    
T  19713396 ttttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaattattaatcacaaatcaaacacatacttaaacaatttaaggattcatgtg 19713495  T
Q  194 tttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||       ||| ||||||| |||| | ||||||||||||||||||||||| || ||||| ||||    
T  19713496 tttacctcttga-------aacatttgtagtagaattatttctgatcacgagcaaagcaaaacaacgatgcctct 19713563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 39539880 - 39539673
Alignment:
Q  64 ctgaagggattttaagaggggattttc-aaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaa 162  Q
    |||||||||||| |||||||| || || ||||||||||||| |||   |||| ||||| ||| |||||||||||||||||||| |||||||||||||||     
T  39539880 ctgaagggatttcaagaggggtttatcgaaaattttaatccgcttaatggaacaaatctcat-gaaacggatcttgattaaataattaatcacaaatcat 39539782  T
Q  163 a--cagaaacttaaacactttaag-attcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagc 259  Q
    |  || | |||||||||||||||| |||| || ||||| | ||||||| ||||||||||||||||||||   ||||||||||| |||||||||| | |||    
T  39539781 aagcacatacttaaacactttaaggattcctgagtttatcccttgaagtgcagaacctttgtagcagaatagtttctgatcacaagcaaagcaacgtagc 39539682  T
Q  260 gatgtctct 268  Q
    |||||||||    
T  39539681 gatgtctct 39539673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 28718819 - 28718960
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||| |||||||  |||||||||||| ||| ||||| || ||| ||||||| |||||||| |||||||||||||||||||||||||||||||     
T  28718819 tgaagggatttaaagagggt-ttttcaaaattt-aatactcttggcagaacaaatcccgttgaaacgaatcttgattaaatcattaatcacaaatcaaaa 28718916  T
Q  165 agaaacttaaacactttaa-gattcatgtgtttacctcttgaag 207  Q
      |||||||||| |||||| | ||||||||||||||||||||||    
T  28718917 ccaaacttaaacgctttaagggttcatgtgtttacctcttgaag 28718960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 938385 - 938477
Alignment:
Q  69 gggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||| |||| ||||||||||||||||  |||| |||||||||||| |||||||||| || |||| |||||||||||||||||||||||    
T  938385 gggattttaaggggggtttttcaaaattttaattttcttagcggaagaaatctcattgaaacgaat-ttga-taaatcattaatcacaaatcaaa 938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 22546232 - 22546323
Alignment:
Q  72 attttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattga-aacggatcttgattaaatcattaatcacaaatcaaaca 165  Q
    ||||||||||||| |||||||||||||||||||||| || ||| |||||||   || ||| |||||||||||||| |||||||||||||||||||    
T  22546232 attttaagaggggtttttcaaaattttaatcctcttagcagaataaatccc---gagaacagatcttgattaaattattaatcacaaatcaaaca 22546323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 17297876 - 17297953
Alignment:
Q  86 ttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaaca 165  Q
    ||||||||||||||| |||||| |||||| |||| | | |||| ||||| ||||||||||||||||||||||||||||||    
T  17297876 ttttcaaaattttaa-cctcttggcggaataaattcaaatgaa-cggatattgattaaatcattaatcacaaatcaaaca 17297953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 938485 - 938608
Alignment:
Q  140 ttaaatcattaatcacaaatcaaacagaaacttaaacactttaag-attcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctga 238  Q
    |||||||||||||| ||||||||| |   | |||| ||||||||| ||||||||||||||||||||||  ||| ||| |||| ||||||| | |||| ||    
T  938485 ttaaatcattaatcgcaaatcaaatatttatttaa-cactttaaggattcatgtgtttacctcttgaaacgcaaaacttttgcagcagaattgtttccga 938583  T
Q  239 tcacgagcaaagcaaagcagcgatg 263  Q
    |||| | |||| ||| | |||||||    
T  938584 tcacaaacaaaacaacgtagcgatg 938608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 17313951 - 17314029
Alignment:
Q  86 ttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaaca 165  Q
    |||||||||||||||||||||| |||| | |||| |   |||| |  || ||||||||||||||||||||||||||||||    
T  17313951 ttttcaaaattttaatcctcttggcgggataaattcagatgaa-catatattgattaaatcattaatcacaaatcaaaca 17314029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 4071 - 3870
Alignment:
Q  58 ataccactgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaa 157  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4071 ataccactgaagggattttaagaggagtttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaa 3972  T
Q  158 atcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagca 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  3971 atcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagca 3872  T
Q  258 gc 259  Q
    ||    
T  3871 gc 3870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 8456 - 8252
Alignment:
Q  64 ctgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8456 ctgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacgaatcttgattaaatcattaaacacaaatcaaa 8357  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8356 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatg 8257  T
Q  264 tctct 268  Q
     ||||    
T  8256 cctct 8252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 67 - 268
Target Start/End: Complemental strand, 21942012 - 21941811
Alignment:
Q  67 aagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacag 166  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  21942012 aagggattttaagaggggtttttcaaaattttaatcctctatgcggaaaaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaatag 21941913  T
Q  167 aaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtct 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21941912 aaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcct 21941813  T
Q  267 ct 268  Q
    ||    
T  21941812 ct 21941811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 15327569 - 15327367
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  15327569 tgaagggattt-aagagaggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatattgattaaatcattaatcacaaatcaaat 15327471  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  15327470 agaaacttaaacactttaagattcatgtgtttacctcttgaagagctgaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 15327371  T
Q  265 ctct 268  Q
    ||||    
T  15327370 ctct 15327367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 15507938 - 15507736
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  15507938 tgaagggattt-aagagaggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatattgattaaatcattaatcacaaatcaaat 15507840  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  15507839 agaaacttaaacactttaagattcatgtgtttacctcttgaagagctgaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 15507740  T
Q  265 ctct 268  Q
    ||||    
T  15507739 ctct 15507736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 6095492 - 6095290
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  6095492 tgaagggattttaagagggt-ttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcactaatcaaat 6095394  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||     
T  6095393 agaaatttaaatactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaaacagcgatgc 6095294  T
Q  265 ctct 268  Q
    ||||    
T  6095293 ctct 6095290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 22172836 - 22172629
Alignment:
Q  65 tgaagggattttaagaggggatttt--caaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatc 160  Q
    ||||||||||||||||| || ||||  ||||||||||  |||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  22172836 tgaagggattttaagagaggtttttttcaaaattttataatccgcttagcggaacaaatcccattgaaacggatcttgattaaatcattaatcataaatc 22172737  T
Q  161 aaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  22172736 aaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcg 22172637  T
Q  261 atgtctct 268  Q
    ||| ||||    
T  22172636 atgcctct 22172629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 28549376 - 28549230
Alignment:
Q  71 gattttaagag-gggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaa 169  Q
    ||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28549376 gattttaagagagggtttttcacaattttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaa 28549277  T
Q  170 cttaaacactttaagattcatgtgtttacctcttgaagagcagaacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28549276 cttaaacactttaagattcatgtgtttacctcttgaagagcagaacc 28549230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 24644263 - 24644092
Alignment:
Q  98 taatcctctttgcggaagaaatcccattgaaa-cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttt 196  Q
    |||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24644263 taatcctcttagcggaacaaattccattgaaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattcatgtgttt 24644164  T
Q  197 acctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    ||||||||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||| ||||    
T  24644163 acctcttgaagagcagaacctttgtataacaaatatttctgatcacgagcaaagcagagcagcgatgcctct 24644092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 71 - 253
Target Start/End: Original strand, 24795853 - 24796035
Alignment:
Q  71 gattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattg-aaacggatcttgattaaatcattaatcacaaatcaaacagaaa 169  Q
    |||||||||||||| | |||||||||||||||||||| |||||| ||||  ||||| |||||||| || ||||||||||||||||||||||||||| |||    
T  24795853 gattttaagaggggttattcaaaattttaatcctcttagcggaacaaatttcattgaaaacggattttcattaaatcattaatcacaaatcaaacacaaa 24795952  T
Q  170 c-ttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaa 253  Q
    | ||||||||||   ||||||||||||||| |||||||| ||| ||||||||||||| |||| ||| |||| | || ||||||||    
T  24795953 ctttaaacactt--ggattcatgtgtttacgtcttgaagcgcataacctttgtagcataaatgtttttgataatgatcaaagcaa 24796035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 29230706 - 29230589
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||| |||||||  |||| |||||||||||| |||| |||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  29230706 tgaagggatttcaagagggtttttttaaaattttaatcatcttagcggaataaatctcattgaaacagatcttgattaaatcatcaatcacaaatcaaac 29230607  T
Q  165 agaaacttaaacacttta 182  Q
    | ||||||||||| ||||    
T  29230606 acaaacttaaacatttta 29230589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 27660698 - 27660795
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattg-aaacggatcttgattaaatcattaatcacaaatca 161  Q
    |||| |||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||| |||||||||||    
T  27660698 tgaaaggattttaagagaggtttttcaaaattttaatcctcttagcggaagaaatcccattgaaaatgaatcttgattaaatcatttatcacaaatca 27660795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 268
Target Start/End: Complemental strand, 17089347 - 17089214
Alignment:
Q  139 attaaatcattaatcacaaat---caaacagaaacttaaacactttaa-gattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatcttt 234  Q
    ||||||||| |||||||| ||   |||||| | ||||||| | ||||| |||||||||||||||||||||||| ||| ||| |||||||  |||   |||    
T  17089347 attaaatcaataatcacagattaacaaacacatacttaaatattttaaagattcatgtgtttacctcttgaagtgcataacatttgtagtcgaatcgttt 17089248  T
Q  235 ctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
     |||||| ||||||||| ||| || |||| ||||    
T  17089247 atgatcatgagcaaagctaagtagagatgcctct 17089214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 472 - 269
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  472 tgaagggattttaagaggggtttttcaaaattttaatcctcttttctgaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaat 373  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  372 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacaagcaaagcaaagcagcgatgt 273  T
Q  265 ctct 268  Q
    ||||    
T  272 ctct 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 4588 - 4384
Alignment:
Q  64 ctgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4588 ctgaagggattttgagaggggtttttcaaaattttaatcctctttatagaataaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 4489  T
Q  164 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  4488 cagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatg 4389  T
Q  264 tctct 268  Q
     ||||    
T  4388 cctct 4384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 19660 - 19457
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19660 tgaagggattttaagaggagtttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaat 19561  T
Q  165 agaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgt 264  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||     
T  19560 agaaacttaaacactttaagattcatgtgtttaccttttgaagagcacaatctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgc 19461  T
Q  265 ctct 268  Q
    ||||    
T  19460 ctct 19457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 26557 - 26357
Alignment:
Q  68 agggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacaga 167  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26557 aggggttttaagaggggtttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaataga 26458  T
Q  168 aacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||| ||||||||||||||||||||| |||    
T  26457 aacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagtataaatttttcttatcatgagcaaagcaaagcagcgatgcctc 26358  T
Q  268 t 268  Q
    |    
T  26357 t 26357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 78 - 268
Target Start/End: Original strand, 22790704 - 22790896
Alignment:
Q  78 agaggggattttcaaaatttta--atcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaa 175  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  22790704 agaggggtttttcaaaattttataatcctctttgcggaagaaatcccattgaaattgatcttgattaaatcattaatcacaaatcaaacaaaaacttaaa 22790803  T
Q  176 cactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||| ||||    
T  22790804 cactttaagattcatgtgtttacctcttgaagagcagaacctttgtagaagaaatatttctgatgacgagcaaagcaaagaagcgatgcctct 22790896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 65 - 253
Target Start/End: Complemental strand, 18621184 - 18620995
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  18621184 tgaagggattttaagaagggtttttcaaaattttaatcctctttgcggaataaatctcattgaaacggatcttgattaaatgattaatcacaaatcaaac 18621085  T
Q  165 agaaacttaaacactttaag-attcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaa 253  Q
    | | | ||||||| |||||| |||||||||||||||||||||| |||| ||||||| |||||||| | ||| |||||||||| |||||||    
T  18621084 acatagttaaacaatttaagaattcatgtgtttacctcttgaaaagcataacctttatagcagaattgtttttgatcacgagtaaagcaa 18620995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 65 - 263
Target Start/End: Complemental strand, 41665115 - 41664914
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||| |||||||  |||| ||||||||||||||||| ||| || ||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  41665115 tgaagggatttaaagagggcttttttaaaattttaatcctcttagcgtaacaaatatcattaaaatggatcttgattaaatcattaatcacaaatcaaac 41665016  T
Q  165 agaaacttaaacactttaa-gattc--atgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcga 261  Q
    | | ||||||||| ||||| |||||  ||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||| ||||| | |||||    
T  41665015 acatacttaaacaatttaaggattcatatgtgtttacctcttgaagagcagaacatttgtagtagaattgtttctgatcacgagcatagcaacgtagcga 41664916  T
Q  262 tg 263  Q
    ||    
T  41664915 tg 41664914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 268
Target Start/End: Complemental strand, 27353696 - 27353502
Alignment:
Q  67 aagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacg-----gatcttgattaaatcattaatcacaaatca 161  Q
    |||| ||| ||||||||| |||||||||||||||| ||||| |||||| |||| |||||||||||     |||||||||||||||||||||||||||       
T  27353696 aaggtattctaagaggggtttttcaaaattttaattctcttagcggaacaaattccattgaaacgaaacagatcttgattaaatcattaatcacaaa--- 27353600  T
Q  162 aacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcga 261  Q
            | |||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||   |||||||||||||||||||||| | |||||    
T  27353599 --------cataaacactttaagatt-atgtgtttacctcttgaagcgcagaatctttgtagcggaatagtttctgatcacgagcaaagcaacgtagcga 27353509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 12299072 - 12298996
Alignment:
Q  132 gatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaa-gattcatgtgtttacctcttgaag 207  Q
    ||||||||||| ||||||||||| ||||  || | | |||||||||||||||  ||||||||||||||| |||||||    
T  12299072 gatcttgattatatcattaatcataaatataatacatacttaaacactttaatcattcatgtgtttaccccttgaag 12298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 116 - 268
Target Start/End: Original strand, 892 - 1044
Alignment:
Q  116 aaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaac 215  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  892 aaatcccattgaaatggatcttgcttaaatcattaatcacaaatcaaacaaaaacttaaacacttcaagattcatgtgtttacctcttgaagaacagaac 991  T
Q  216 ctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgtctct 268  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  992 ctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgtctct 1044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 229199 - 229445
Alignment:
Q  22 ttgaatataatgatttaaccagaaccagatgctctgataccactgaagggatttta-agaggggattttcaaaattttaatcctctttgcggaagaaatc 120  Q
    |||||| ||||||||||| || ||| | | |||||||||||||||||||||||| | ||||||  ||||| ||||||||||||||||||||||||||||     
T  229199 ttgaatgtaatgatttaatcaaaactaaaagctctgataccactgaagggatttaatagagggttttttccaaattttaatcctctttgcggaagaaatt 229298  T
Q  121 ccattgaaacggatcttgattaaatcatta---atcacaaatcaaacagaaacttaaacactttaag-attcatgtgtttacctcttgaagagcagaacc 216  Q
     |||||||||| ||||||||||||| ||||   ||||||||||||||| | ||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  229299 tcattgaaacgaatcttgattaaattattattaatcacaaatcaaacacatacttaaacaatttaaggattcatgtgtttacctctagaagagcagaacc 229398  T
Q  217 tttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    ||||||  |||| | |||||||||||||||||||||||  |||||||    
T  229399 tttgtactagaattatttctgatcacgagcaaagcaaaatagcgatg 229445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 6877 - 6672
Alignment:
Q  65 tgaagggatttta-agaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 163  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  6877 tgaagggatttaatagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaatggatcttgattaaatcattaatcaccaatcaaa 6778  T
Q  164 cagaaacttaaacactttaa-gattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgat 262  Q
    || | ||||||||| || || |||||||||||||||| ||  ||||||||||||||||||| |||| | |||| ||||||||||||||||||  ||||||    
T  6777 cacatacttaaacaattaaaggattcatgtgtttaccactcaaagagcagaacctttgtagtagaattatttcagatcacgagcaaagcaaaatagcgat 6678  T
Q  263 gtctct 268  Q
    | ||||    
T  6677 gcctct 6672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 88059 - 87855
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    |||||||||||||||||||| ||||| ||  ||||||||||| ||||||||||||  |||||||||||||||||||||||| ||| ||||| ||||||||    
T  88059 tgaagggattttaagaggggtttttccaatctttaatcctctatgcggaagaaatttcattgaaacggatcttgattaaattatttatcactaatcaaac 87960  T
Q  165 agaaacttaaacacttt-aagattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatg 263  Q
    | | || |||||| ||| |||||||||| ||||||||||||||||||||||||||||||| | || | ||| ||||||| ||||||| |||| |||||||    
T  87959 acatacataaacaatttaaagattcatgagtttacctcttgaagagcagaacctttgtagtataattgtttatgatcacaagcaaagtaaagtagcgatg 87860  T
Q  264 tctct 268  Q
     ||||    
T  87859 cctct 87855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 65 - 253
Target Start/End: Original strand, 107107 - 107295
Alignment:
Q  65 tgaagggattttaagaggggattttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaac 164  Q
    ||||||||||| ||||| || ||||||||| ||||||| |||| ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  107107 tgaagggatttaaagagaggtttttcaaaaatttaatc-tcttagcgaaacaaatcccattaaaacggatcttgattaaatcattaatcacaaatcaaac 107205  T
Q  165 agaaacttaaacactttaa-gattcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaa 253  Q
    | | ||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| |||| | |||  |||||| ||||||||||    
T  107206 acatacttaaacaatttaaggattcatgtgtttacctctggaagagcataacctttgtagaagaattgtttacgatcacaagcaaagcaa 107295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 372 - 209
Alignment:
Q  86 ttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaaga 185  Q
    |||||||||||||||||||||  || ||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |    |||||||||||||| |    
T  372 ttttcaaaattttaatcctctcagcagaataaatcccattgaatcggatcttgattaaatcattaatcaaaaatcaaaaatgttcttaaacactttaaaa 273  T
Q  186 ttcatgtgtttacctcttgaagagcagaacctttgtagcagaaatctttctgatcacgagcaaa 249  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||    
T  272 ttcatgtgtttatctcttgaagagtagaacctttgtagcaaaaatgtttctaatcacaagcaaa 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1383 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1383
Description:

Target: scaffold1383; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 53 - 4
Alignment:
Q  50 atgctctgataccactgaagggattttaagaggggattttcaaaatttta 99  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  53 atgctctgataccactgaagggattttaagagaggtttttcaaaatttta 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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