View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_2 (Length: 439)
Name: NF10660_low_2
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 19653106 - 19653448
Alignment:
| Q |
22 |
taagttggtcgatgaattaaagaataccagtgataatataacagaaaaagaagccatggagaaaattttgcgcacactataaaaagtcggttcaattaca |
121 |
Q |
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| T |
19653106 |
taagttggtcgacaaattgaagaataccagtgataatataacagaaaaagaagccatggagaaaattttgcacacactataacaagtcgattcaattaca |
19653205 |
T |
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| Q |
122 |
ttacacccaagcagcaattctagagtcaaaataactaaagacatcgagattaaatggttaaatgagtgatttgtgcaacggaatgtagactgcaaccaaa |
221 |
Q |
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| T |
19653206 |
ttacacccaagcagcaattctagagtcaatat--ctaaacacatcgagattaaatggttaaatgagtgatttgtgcaacggaatgtagaccgcaaccaaa |
19653303 |
T |
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| Q |
222 |
gaggcaacggatcttttcaaaacaaatccaatattcaatgtcacaaatgcaaaatatatacatactatatagaagcagccacaaatggttctctactcaa |
321 |
Q |
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| T |
19653304 |
gaggcaatggatctttttaaaacaaatccaatattcaatgtcacagatgcaaaatatatacatactatatagcagcagccacaaatggt--tctactcaa |
19653401 |
T |
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| Q |
322 |
gcaatttggtaacagaaaatgctaggtaaaacatacattacatagtt |
368 |
Q |
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| T |
19653402 |
gcaatttggtaacataaaatgctaggtgaaacatacattaaatagtt |
19653448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 19653475 - 19653545
Alignment:
| Q |
358 |
attacatagttatcaagtgcatgctagaattggagaaccattatatgtatctcagaactagaaatattcat |
428 |
Q |
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| T |
19653475 |
attacatagttatcaagtgcatactagaattggagaaccattatatgtatctaagaactagaaatattcat |
19653545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 8675803 - 8675735
Alignment:
| Q |
323 |
caatttggtaacagaaaatgctaggtaaaacatacattacatagttatcaagtgcatgctagaattgga |
391 |
Q |
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| T |
8675803 |
caatttggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattgga |
8675735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 9619422 - 9619359
Alignment:
| Q |
315 |
tactcaagcaatttggtaacagaaaatgctaggtaaaacatacattacatagttatcaagtgca |
378 |
Q |
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| T |
9619422 |
tactcaagcaatttggttacagaaaatgctaagcataacatacattgcacagttattaagtgca |
9619359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 19969005 - 19969069
Alignment:
| Q |
313 |
tctactcaagcaatttggtaacagaaaatgctaggtaaaacatacattacatagttatcaagtgc |
377 |
Q |
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| T |
19969005 |
tctattcaagcagtttggtaacagaaaatgttgggcgaaacatactttgcatagttatcaagtgc |
19969069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 32227862 - 32227797
Alignment:
| Q |
313 |
tctactcaagcaatttggtaacagaaaatgctaggtaaaacatacattacatagttatcaagtgca |
378 |
Q |
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| T |
32227862 |
tctactcgagcaatttggttacataaaatattaagtgaaacattcattgcatagttatcaagtgca |
32227797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 16257864 - 16257945
Alignment:
| Q |
295 |
agcagccacaaatggttctctactcaagcaatttggtaacagaaaatgctaggtaaaacatacattacatagttatcaagtgca |
378 |
Q |
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| T |
16257864 |
agcagccacaaattgttct--acttgagcaatttggttacataaaataataagagaaacatacattgcatagttatcaagtgca |
16257945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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