View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10660_low_24 (Length: 252)

Name: NF10660_low_24
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10660_low_24
NF10660_low_24
[»] chr6 (9 HSPs)
chr6 (1-112)||(31290833-31290944)
chr6 (37-181)||(26629201-26629346)
chr6 (37-181)||(26735177-26735322)
chr6 (2-108)||(26963980-26964086)
chr6 (2-108)||(26650739-26650845)
chr6 (2-108)||(26756707-26756813)
chr6 (56-100)||(26964723-26964767)
chr6 (1-48)||(27652779-27652826)
chr6 (121-181)||(27422971-27423031)
[»] scaffold0003 (1 HSPs)
scaffold0003 (121-181)||(64332-64392)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 31290944 - 31290833
Alignment:
Q  1 ttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaat 100  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| ||| | |||||||||||||  |||||||||||||||||    
T  31290944 ttgagttatgaaacgaaattctccacttccatttgccaaatcaaaacaaaatttgataggaaaaaagcttctttataccatctagttcatacatataaat 31290845  T
Q  101 ttttccacaaca 112  Q
     || ||||||||    
T  31290844 gttcccacaaca 31290833  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 26629346 - 26629201
Alignment:
Q  37 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 135  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26629346 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26629247  T
Q  136 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 181  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26629246 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26629201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 26735322 - 26735177
Alignment:
Q  37 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 135  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26735322 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26735223  T
Q  136 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 181  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26735222 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26735177  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 26964086 - 26963980
Alignment:
Q  2 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 101  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| |||||| ||||| || | |||||||| |||||||||||||||||      
T  26964086 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgataggaaaaaggcttttgtataccatcaagttcatacatataaacg 26963987  T
Q  102 tttccac 108  Q
    |||||||    
T  26963986 tttccac 26963980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 26650845 - 26650739
Alignment:
Q  2 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 101  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26650845 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26650746  T
Q  102 tttccac 108  Q
    |||||||    
T  26650745 tttccac 26650739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 26756813 - 26756707
Alignment:
Q  2 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 101  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26756813 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26756714  T
Q  102 tttccac 108  Q
    |||||||    
T  26756713 tttccac 26756707  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 26964767 - 26964723
Alignment:
Q  56 ataggagaaaggtttctttataccataaagttcatacatataaat 100  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  26964767 ataggaaaaaggcttctttataccatcaagttcatacatataaat 26964723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27652779 - 27652826
Alignment:
Q  1 ttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaaca 48  Q
    |||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  27652779 ttgagttatgaaacgaaattctccacttccatttgccagatcaaaaca 27652826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 27422971 - 27423031
Alignment:
Q  121 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 181  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  27422971 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 27423031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 64392 - 64332
Alignment:
Q  121 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 181  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  64392 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 64332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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