View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_29 (Length: 248)
Name: NF10660_low_29
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 37893714 - 37893604
Alignment:
| Q |
129 |
aagcttaatatataagattccagcttcaaatttggcaccaatgttatttgtatcagaatgaggaggtattgaaaattctttgcgaaatcaacgccatttt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
37893714 |
aagcttaatatataagattccagcttcaaatttggcaccaatgttatttgtatcagaatgaggtggtattgaaaattctttgcgaaatcgacgccatttt |
37893615 |
T |
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| Q |
229 |
ttctcattcat |
239 |
Q |
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||||||||||| |
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| T |
37893614 |
ttctcattcat |
37893604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 37188812 - 37188702
Alignment:
| Q |
129 |
aagcttaatatataagattccagcttcaaatttggcaccaatgttatttgtatcagaatgaggaggtattgaaaattctttgcgaaatcaacgccatttt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || |||||||||| |
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| T |
37188812 |
aagcttaatatataagattccagcttcaaatttggcaccaatgttatttgtatcagaatgaggtggtattgaaaattctttgtgaagtcgacgccatttt |
37188713 |
T |
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| Q |
229 |
ttctcattcat |
239 |
Q |
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||||||||||| |
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| T |
37188712 |
ttctcattcat |
37188702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 37188940 - 37188884
Alignment:
| Q |
1 |
tcagaaacttgaggagcagtgtttggtttctgaggaattgttgctggttgctgaggc |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188940 |
tcagaaacttgaggagcagtgtttggtttctgaggaattgttgctggttgctgaggc |
37188884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 37893842 - 37893786
Alignment:
| Q |
1 |
tcagaaacttgaggagcagtgtttggtttctgaggaattgttgctggttgctgaggc |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893842 |
tcagaaacttgaggagcagtgtttggtttctgaggaattgttgctggttgctgaggc |
37893786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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