View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10660_low_3 (Length: 391)
Name: NF10660_low_3
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_3 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 11445126 - 11445484
Alignment:
| Q |
15 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445126 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11445225 |
T |
|
| Q |
115 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445226 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11445325 |
T |
|
| Q |
215 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgcca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445326 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgcca |
11445425 |
T |
|
| Q |
315 |
catgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatt |
373 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445426 |
cacgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatt |
11445484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 11547964 - 11547606
Alignment:
| Q |
15 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547964 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11547865 |
T |
|
| Q |
115 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547864 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11547765 |
T |
|
| Q |
215 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgcca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547764 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgcca |
11547665 |
T |
|
| Q |
315 |
catgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatt |
373 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547664 |
cacgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatt |
11547606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 11507733 - 11507375
Alignment:
| Q |
15 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507733 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11507634 |
T |
|
| Q |
115 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507633 |
ttcaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11507534 |
T |
|
| Q |
215 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgcca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
11507533 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtgagccatttcgtagaggagtacca |
11507434 |
T |
|
| Q |
315 |
catgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatt |
373 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
11507433 |
tatgttcagacgacatggatgaaccgttccggtaacaaatggtgacaaacatgttgatt |
11507375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 11468116 - 11468474
Alignment:
| Q |
15 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
114 |
Q |
| |
|
||||||||||||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | ||| |
|
|
| T |
11468116 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagat |
11468215 |
T |
|
| Q |
115 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
214 |
Q |
| |
|
|||||||| ||||||||||| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |||| |||||||| |
|
|
| T |
11468216 |
tccaaaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagatt |
11468315 |
T |
|
| Q |
215 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgcca |
314 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || ||||||||||||||||||||| |
|
|
| T |
11468316 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
11468415 |
T |
|
| Q |
315 |
catgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatt |
373 |
Q |
| |
|
||| | |||| |||||||||||| | ||| |||||| ||||| ||||| ||||||| |
|
|
| T |
11468416 |
catatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgatt |
11468474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 11523345 - 11522987
Alignment:
| Q |
15 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
114 |
Q |
| |
|
||||||||||||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | ||| |
|
|
| T |
11523345 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagat |
11523246 |
T |
|
| Q |
115 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
214 |
Q |
| |
|
|||||||| ||||||||||| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |||| |||||||| |
|
|
| T |
11523245 |
tccaaaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagatt |
11523146 |
T |
|
| Q |
215 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgcca |
314 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || ||||||||||||||||||||| |
|
|
| T |
11523145 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
11523046 |
T |
|
| Q |
315 |
catgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatt |
373 |
Q |
| |
|
||| | |||| |||||||||||| | ||| |||||| ||||| ||||| ||||||| |
|
|
| T |
11523045 |
catatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgatt |
11522987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 34784539 - 34784235
Alignment:
| Q |
15 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
114 |
Q |
| |
|
|||||||||||||||||| || |||||||||| | |||||| |||||||| || || ||||||| | | || ||||||| | |||||||| | ||| |
|
|
| T |
34784539 |
aacctgtggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagat |
34784440 |
T |
|
| Q |
115 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
214 |
Q |
| |
|
|||||||| |||||||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| ||||| | |||||| |
|
|
| T |
34784439 |
tccaaaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagatt |
34784340 |
T |
|
| Q |
215 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgcca |
314 |
Q |
| |
|
||| ||||||||||||| | |||||| | |||||||| |||| | |||||| || | ||||||| |||||| ||| ||||||||| || || | ||| |
|
|
| T |
34784339 |
cagaatctttgttaagaaaatcccaatagttctctcctgttgcacactcaaaaagagtttgttccttatcctcattgaaccatttctttgaagacttcca |
34784240 |
T |
|
| Q |
315 |
catgt |
319 |
Q |
| |
|
||||| |
|
|
| T |
34784239 |
catgt |
34784235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 34776327 - 34776100
Alignment:
| Q |
15 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
114 |
Q |
| |
|
|||||||||||||||||| || || ||||| |||| ||||||| |||||| ||||||||||| | ||| || | ||||||||||||||||| | |||| |
|
|
| T |
34776327 |
aacctgtggttgatcaaaaacagtacatttaaggtgaggaaaaatttcatgaatgagttttgtaacaccaccagtaccacctccaacatcaacaagagac |
34776228 |
T |
|
| Q |
115 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
214 |
Q |
| |
|
|||||||| || || || | || ||||| ||| |||| || || ||| |||||||| |||||||| |||||||||||||||| | ||||| |
|
|
| T |
34776227 |
tccaaaccctcgaaaacgcgtttattctcttggagaacaagcttaaacattctagaatcagatgccatagcatcttgaaacatactcaaagtactagatt |
34776128 |
T |
|
| Q |
215 |
cagtatctttgttaagatagtcccaaaa |
242 |
Q |
| |
|
||| ||||||||||||| | |||||||| |
|
|
| T |
34776127 |
cagaatctttgttaagaaaatcccaaaa |
34776100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 2390 - 2032
Alignment:
| Q |
15 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2390 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
2291 |
T |
|
| Q |
115 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2290 |
cccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
2191 |
T |
|
| Q |
215 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgcca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
2190 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtgagccatttcgtagaggagtacca |
2091 |
T |
|
| Q |
315 |
catgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatt |
373 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
2090 |
tatgttcagacgacatggatgaaccgttccggtaacaaatggtgacaaacatgttgatt |
2032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University