View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_34 (Length: 239)
Name: NF10660_low_34
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 16867612 - 16867392
Alignment:
| Q |
11 |
caaaggatccatcaatgcagttaccattactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16867612 |
caaaggatccatcaatgcagttaccattactgggtatgaagatgtcccgaccaacaatgagcaggcactacaaaaagcagtggctaatcaaccgatttcc |
16867513 |
T |
|
| Q |
111 |
gtagccattgatgctagtggttccgactttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
16867512 |
gtagccattgatgctagtggttccgactttcaattctacaaaagtggcgtctttactggttcatgcggaactgagttggatcatggtgttaccgccgtgg |
16867413 |
T |
|
| Q |
211 |
gttatggtgttagtgatgatg |
231 |
Q |
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|||||||||||||| |||||| |
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| T |
16867412 |
gttatggtgttagtaatgatg |
16867392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 44731211 - 44731016
Alignment:
| Q |
25 |
atgcagttaccattactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttctgtagccattgatgc |
124 |
Q |
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|||||| ||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| || || |||||||| |||||||| ||||||||||| |
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| T |
44731211 |
atgcagctaccattaccgggtatgaagatgtccctgccaacaatgagcaggcattgcaaaaagctgtcgcaaatcaacctatttctgttgccattgatgc |
44731112 |
T |
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| Q |
125 |
tagtggttccgactttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgggttatggtgt |
220 |
Q |
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| T |
44731111 |
tagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatgtggaaccgagttggatcatggtgtcaccgctgtgggttatggtgt |
44731016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 30719789 - 30719580
Alignment:
| Q |
11 |
caaaggatccatcaatgcagttaccattactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttct |
110 |
Q |
| |
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||||| ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||| ||||| |
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| T |
30719789 |
caaagcatccatccatgcagttactattaccgggtatgaagatgtccctgccaacaatgagcaggcactgcagaaagctgtggcaaatcaaccaatttcc |
30719690 |
T |
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| Q |
111 |
gtagccattgatgctagtggttccgactttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgg |
210 |
Q |
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| T |
30719689 |
gtagctattgatgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtag |
30719590 |
T |
|
| Q |
211 |
gttatggtgt |
220 |
Q |
| |
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|||||||||| |
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| T |
30719589 |
gttatggtgt |
30719580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 30881570 - 30881779
Alignment:
| Q |
11 |
caaaggatccatcaatgcagttaccattactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttct |
110 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||| ||||| |
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| T |
30881570 |
caaagcatccatccatgcagttactattaccgggtatgaagatgtccctgccaacaatgagcaggcactgcagaaagctgtggcaaatcaaccaatttcc |
30881669 |
T |
|
| Q |
111 |
gtagccattgatgctagtggttccgactttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgg |
210 |
Q |
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||||| |||||||||||||| || |||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||| | |
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| T |
30881670 |
gtagctattgatgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatggtgtcacagccgtag |
30881769 |
T |
|
| Q |
211 |
gttatggtgt |
220 |
Q |
| |
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|||||||||| |
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| T |
30881770 |
gttatggtgt |
30881779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 30892682 - 30892873
Alignment:
| Q |
40 |
ctgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttctgtagccattgatgctagtggttccgactt |
139 |
Q |
| |
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|||| ||||||||||||||||| ||||||||| | ||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||| || |
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| T |
30892682 |
ctggatatgaagatgtcccggcaaacaatgagaatgcactgcaaaaagcagtggctaatcaaccaatttccgtagccattgatgcgagtggctccgattt |
30892781 |
T |
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| Q |
140 |
tcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgggttatggtgttagtgatgatg |
231 |
Q |
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| T |
30892782 |
ccaattttacaaaagtggtgtcttcactggttcatgtggtactcagttggatcatggtgttactgctgtgggttatggcattagtaatgatg |
30892873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 231
Target Start/End: Original strand, 8899210 - 8899405
Alignment:
| Q |
36 |
attactgggtatgaagatgtcccggccaacaatgagcaggcactacaaaaagcagtggccaatcaaccgatttctgtagccattgatgctagtggttccg |
135 |
Q |
| |
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||||| |||||||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| || | |
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| T |
8899210 |
attaccgggtatgaagatgttcctgccaacaatgagcaagcactgcaaaaagcagtggcaaatcaaccaatttctgtagcaattgatgctagtggctctg |
8899309 |
T |
|
| Q |
136 |
actttcaattctacaaaagtggtgtttttaccggttcatgtggaaccgagttggatcatggtgttaccgccgtgggttatggtgttagtgatgatg |
231 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || ||||| ||||||||||| ||| |||||| |
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| T |
8899310 |
actttcaattttacaaaagtggtgtatttaccggttcatgcggaactgagttggatcacggtgtcactgccgtaggttatggtgtcagtaatgatg |
8899405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 31727399 - 31727531
Alignment:
| Q |
67 |
atgagcaggcactacaaaaagcagtggccaatcaaccgatttctgtagccattgatgctagtggttccgactttcaattctacaaaagtggtgtttttac |
166 |
Q |
| |
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||||||||||| | |||||||| || || ||||||||| |||| || ||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| |
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| T |
31727399 |
atgagcaggcattgcaaaaagccgtagctaatcaaccggtttcggtggccattgatgctagtggctctgacttccaattttacaaaagtggtgtatttac |
31727498 |
T |
|
| Q |
167 |
cggttcatgtggaaccgagttggatcatggtgt |
199 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |
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| T |
31727499 |
tggttcatgtggaactgagttggatcatggtgt |
31727531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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