View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10660_low_4 (Length: 384)
Name: NF10660_low_4
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_4 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 6955939 - 6955666
Alignment:
| Q |
9 |
atgaaggtagccctaatttctaagaacaagcttcga------gacggcacttttcaatgtccttcatctacgaatgtcttgcacgagccatggatccgct |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6955939 |
atgaaggtagccctaatttctaagaacaagcttcgatttatcgacggcagttttcaatgtccttcatctacgaatgtcttgcacgagccatggatccgct |
6955840 |
T |
|
| Q |
103 |
gcaacaacatggttctctcatggcttcaacgctcaatttctgaaagtatttctaaatccattttatggatcgacaaagtctcctctgtttggacaaatct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6955839 |
gcaacaacatggttctctcatggcttcaacgctcaatttctgaaagtatttctaaatccattttatggatcgacaaagtctcttctgtttggccaaatct |
6955740 |
T |
|
| Q |
203 |
tgaacttcgtttttcacaaggagatatttttggaatcgctgatattcaagatgacctaactcgatttcaacaag |
276 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6955739 |
tgaacttcgtttttcacaaggggatattttttgaattgctgatattcaagatgacctaactcgatttcaacaag |
6955666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 101 - 276
Target Start/End: Original strand, 22454767 - 22454942
Alignment:
| Q |
101 |
ctgcaacaacatggttctctcatggcttcaacgctcaatttctgaaagtatttctaaatccattttatggatcgacaaagtctcctctgtttggacaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22454767 |
ctgcaacaacatggttctctcatggcttcaatgctcaatttttgaaagtatttctaaatccattttatggatcgacaaagcctcctctgtttggacaaat |
22454866 |
T |
|
| Q |
201 |
cttgaacttcgtttttcacaaggagatatttttggaatcgctgatattcaagatgacctaactcgatttcaacaag |
276 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22454867 |
cttgaacttcgtttttcacaaggggatattttttgaatcgctgatattcaagatgacctaactcgatttcaacaag |
22454942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 270 - 369
Target Start/End: Original strand, 10812 - 10911
Alignment:
| Q |
270 |
caacaagctgctgccaactctgtcctttaccaatctgcatccattcattccatttcatctccacaaatgggtaagcaatctgtcctttggatcatggata |
369 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10812 |
caacaagctgctgccaactctgtcctttcccaatctgcatccattcattccatttcatctccacaaatgggtaagcaatctgtcctttagatcatggata |
10911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University