View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_5 (Length: 353)
Name: NF10660_low_5
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 46009641 - 46009322
Alignment:
| Q |
14 |
caaaggagaaaaagcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaaccattcacgcagtgtattctca |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
46009641 |
caaaggagaaaatgcaagatcaggaccaagcacatgatcatatacaagttcatcaacagagtactctttctcatccaaccattcacgcagtgttttctca |
46009542 |
T |
|
| Q |
114 |
cagtgtgactctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagtatgaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009541 |
cagtgtgactctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagtatgaat |
46009442 |
T |
|
| Q |
214 |
caagtagtggaaacattggtgcttttaagtcaggtattgagaggttttgaaccgctttagaattgaacaagtatatggatcggatatagtggagtttcat |
313 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009441 |
caagtagttgaaacattggtgcttttaagtcagatattgagaggttttgaaccgctttagaattgaacaagtatatggatcggatatagtggagtttcat |
46009342 |
T |
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| Q |
314 |
aagcaggtccatgtagttga |
333 |
Q |
| |
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|||||||||||||||||||| |
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| T |
46009341 |
aagcaggtccatgtagttga |
46009322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 15922276 - 15921959
Alignment:
| Q |
14 |
caaaggagaaaaagcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaaccattcacgcagtgtattctca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| || ||||| |||||||| | ||| || || ||| |
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| T |
15922276 |
caaaggagaaaaagcaagatcaggaccaagcacatgatcatgaacaagttcatcaactgaatactcattttcatccaaccattccctcagcgttttatca |
15922177 |
T |
|
| Q |
114 |
cagtgtgactctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagtatgaat |
213 |
Q |
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|| || ||||| || ||||||||||| || || ||||| |||||||||||||| || |||| | ||||||||| | ||| | |||||| ||||| ||| |
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| T |
15922176 |
cactgcgactccgcgattcgcacaccggcatcattgcatttgataaacggtctgccggatttggctattctaactcgaccggcaacatgcgagtacaaat |
15922077 |
T |
|
| Q |
214 |
caagtagtggaaacattggtgcttttaagtcaggtattgagaggttttgaaccgctttagaattgaacaagtatatggatcggatatagtggagtttcat |
313 |
Q |
| |
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| || ||||||||||| |||| |||||| || | ||||| ||| |||||| |||| ||||| ||| || || ||||| |||| |||||| || ||||| |
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| T |
15922076 |
ccagcagtggaaacatcggtgtttttaaatcggatattgtaaggccttgaacagcttcagaatcgaagaaataaatggaccggacatagtgaagcttcat |
15921977 |
T |
|
| Q |
314 |
aagcaggtccatgtagtt |
331 |
Q |
| |
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| || |||||||||||| |
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| T |
15921976 |
caacaagtccatgtagtt |
15921959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 13114570 - 13114257
Alignment:
| Q |
18 |
ggagaaaaagcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaaccattcacgcagtgtattctcacagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| | | |||| | ||| ||||| ||||||||||||||| |||| || || ||||| |
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| T |
13114570 |
ggagaaaaagcaagatcaggaccaagcacatgatctgggacaaatccttcaacactgtattctttttcatcaaaccattcatgcagcgttttatcacacc |
13114471 |
T |
|
| Q |
118 |
gtgactctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagtatgaatcaag |
217 |
Q |
| |
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||| ||| || | || || || || |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||| | || || || |
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| T |
13114470 |
gtgtctcagccacgcgtactcctgcatcgttgcacttgataaacggtcttccagattcgagtattctaatccgacctgaaacatgtgagcaagactcgag |
13114371 |
T |
|
| Q |
218 |
tagtggaaacattggtgcttttaagtcaggtattgagaggttttgaaccgctttagaattgaacaagtatatggatcggatatagtggagtttcataagc |
317 |
Q |
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||||| | | ||||||| ||||||||| | || |||||||||||| | ||| ||| ||||| | || || ||||||||||||||||||||||| ||| |
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| T |
13114370 |
tagtgcataaattggtgtttttaagtcggataatgagaggttttgcatgacttcagagttgaatacataaattgatcggatatagtggagtttcattagc |
13114271 |
T |
|
| Q |
318 |
aggtccatgtagtt |
331 |
Q |
| |
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| |||||||||||| |
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|
| T |
13114270 |
aagtccatgtagtt |
13114257 |
T |
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