View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10660_low_6 (Length: 345)

Name: NF10660_low_6
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10660_low_6
NF10660_low_6
[»] chr2 (3 HSPs)
chr2 (17-331)||(13449266-13449580)
chr2 (9-316)||(13462302-13462607)
chr2 (56-316)||(13441118-13441378)
[»] chr5 (3 HSPs)
chr5 (53-230)||(12541677-12541854)
chr5 (50-311)||(28386260-28386512)
chr5 (252-330)||(12541589-12541667)
[»] chr7 (1 HSPs)
chr7 (56-310)||(3416537-3416791)
[»] chr8 (1 HSPs)
chr8 (63-285)||(12640495-12640717)
[»] chr4 (3 HSPs)
chr4 (50-313)||(48959062-48959325)
chr4 (55-202)||(48963315-48963462)
chr4 (56-292)||(48966271-48966507)
[»] chr6 (3 HSPs)
chr6 (50-195)||(12589188-12589333)
chr6 (56-200)||(12482462-12482606)
chr6 (252-313)||(12589375-12589436)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 13449580 - 13449266
Alignment:
Q  17 gaatagaatagaatagagagaataaattgatccataagaaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatct 116  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13449580 gaatagaatagaatagagagaataatttgatccataagcaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatct 13449481  T
Q  117 ggacatatgatccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttacca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  13449480 ggacatatgatccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttacca 13449381  T
Q  217 aatctctctcatccgacgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtcttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13449380 aatctctctcatccgacgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtcttc 13449281  T
Q  317 aactacggaccccac 331  Q
    |||||||||||||||    
T  13449280 aactacggaccccac 13449266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 13462607 - 13462302
Alignment:
Q  9 agaaacgtgaatag--aatagaatagagagaataaattgatccataagaaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatt 106  Q
    ||||||||||||||  ||| ||| |||||||||| |||| ||    || |||||||||||| ||||||||||||||| ||||| |  ||||||||||||     
T  13462607 agaaacgtgaatagttaattgaaaagagagaatatattgttc----agcaatggaaggtgtagaagttgaacaaccactgaaactgcacttcattccata 13462512  T
Q  107 tctagcatctggacatatgatccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||   ||    
T  13462511 tctagcatctggacatatgatccctctttttgacatagcaattatgtttgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaa 13462412  T
Q  207 tcccttaccaaatctctctcatccgacgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaat 306  Q
    ||||||||||||||||||||||||| |||||| ||  |||||||  |||||||| | || ||||||||||||||||| ||||| ||||| || |||||||    
T  13462411 tcccttaccaaatctctctcatccgccgctccctccctccttcgctttcacaccatcgaattcccctcccaacaagttggccttcctgatggcattgaat 13462312  T
Q  307 ctatgtcttc 316  Q
    ||||||||||    
T  13462311 ctatgtcttc 13462302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 56 - 316
Target Start/End: Complemental strand, 13441378 - 13441118
Alignment:
Q  56 aatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaactatgttt 155  Q
    |||||||||||||||||| |||| |||| ||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13441378 aatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaactatgttt 13441279  T
Q  156 gcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgc-tccttcattccttcgtctt 254  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||  || |||||| ||||| ||  |     
T  13441278 gcatcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttc-ttcctccgcttc 13441180  T
Q  255 cacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtcttc 316  Q
    |||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||    
T  13441179 cacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttc 13441118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 12541854 - 12541677
Alignment:
Q  53 agaaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaactatg 152  Q
    |||||||||||||||||||||||| | |||||| ||| || |||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||| ||    
T  12541854 agaaatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttg 12541755  T
Q  153 tttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatcc 230  Q
    |||||||| | |||||| ||||||||| ||||||||||||||||||| |   || ||||||||||||||||| |||||    
T  12541754 tttgcatcacatggccaacaagtcacaatcatcaccactccctccaatgttgaaacccttaccaaatctctcccatcc 12541677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 311
Target Start/End: Complemental strand, 28386512 - 28386260
Alignment:
Q  50 ataagaaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaact 149  Q
    |||||||||| | |||||||||||||||  |||||||||| || |||||||||| | || |||||||||||||||||| || |||| ||| |||||||||    
T  28386512 ataagaaatgaatggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaact 28386413  T
Q  150 atgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgctccttcattccttc 249  Q
     |||||||||| |||||||| || |||||| ||||||||||||||||||| ||  |||||||||| ||| |||||||||| | |||         ||| |    
T  28386412 ttgtttgcatcacgtggccaacatgtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatctgccgc---------cctcc 28386322  T
Q  250 gtcttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatg 311  Q
    | |||||||||||||| |||||||  |||||||||| ||||||| ||||  |||| ||||||    
T  28386321 gccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatg 28386260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 12541667 - 12541589
Alignment:
Q  252 cttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtcttcaactacggacccca 330  Q
    |||||||| || |||||||||||| ||||||||| ||||||| |||| |||||||||||||| || || || |||||||    
T  12541667 cttcacactgtcgacttcccctccgaacaagtcgacctccctaaaggcattgaatctatgtcctccaccactgacccca 12541589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 56 - 310
Target Start/End: Original strand, 3416537 - 3416791
Alignment:
Q  56 aatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaactatgttt 155  Q
    ||||| |||||||||||| |||| |||| ||||| || |||||||||| | ||| |||||| | |||||||||||||||| ||| |||||| ||||||||    
T  3416537 aatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatcttgcatctagccatatgatccctctttctgatatagcagctatgttt 3416636  T
Q  156 gcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgctccttcattccttcgtcttc 255  Q
    ||||||| |||||| || |||||| ||||||||||||||||||| || ||||  ||||| |||||||| || |  | |||||| |  ||||| || ||||    
T  3416637 gcatcccatggccaacatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctttcttatgccgctcccttcttcctccgccttc 3416736  T
Q  256 acaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctat 310  Q
    ||||||| ||||| ||||  |||||| | | |||||||||||| |||||||||||    
T  3416737 acaccgtcgactttccctttcaacaaatggacctccctgaaggcattgaatctat 3416791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 63 - 285
Target Start/End: Original strand, 12640495 - 12640717
Alignment:
Q  63 ggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaactatgtttgcatccc 162  Q
    ||||||| ||||||||  ||||||||| ||  | |  |||||||||||||| |||| |||||||| ||| |   |||||||||| || ||||||||||||    
T  12640495 ggtgttggagttgaacggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtgacatagcagctttgtttgcatccc 12640594  T
Q  163 gtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgctccttcattccttcgtcttcacaccgt 262  Q
     |||||| ||||||||  ||||||||||||||||||||||  | | | |||||||||||||||| | || || ||| |  ||||| || |||||||||||    
T  12640595 atggccaacaagtcacgatcatcaccactccctccaacgcccatttctttaccaaatctctctccttcgtcgatccgtttttcctccgccttcacaccgt 12640694  T
Q  263 tgacttcccctcccaacaagtcg 285  Q
     ||||||||||||||||||||||    
T  12640695 cgacttcccctcccaacaagtcg 12640717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 313
Target Start/End: Complemental strand, 48959325 - 48959062
Alignment:
Q  50 ataagaaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaact 149  Q
    ||||| |||||||||||||||||||||   |||  ||||| || |||||||||||| || |||| |||| |||||||||||  | | |||||||||||||    
T  48959325 ataagcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaact 48959226  T
Q  150 atgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgctccttcattccttc 249  Q
     |||||||||||| |||||| ||||| ||| |||||||||||||||||||| |  | | | |||||||||||||||||   |  | ||| |  ||||| |    
T  48959225 ctgtttgcatcccatggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttcttcctcc 48959126  T
Q  250 gtcttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtc 313  Q
    | ||||||   ||  |||| |||||||||||||| ||||||||||| ||  |||||||||||||    
T  48959125 gccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtc 48959062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 48963462 - 48963315
Alignment:
Q  55 aaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaactatgtt 154  Q
    ||||||| || ||||||||||||| |||||||||| || |||||||||||| ||| ||| |||| |||||||| ||| |   |||||||||| || ||||    
T  48963462 aaatggagggcgttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtt 48963363  T
Q  155 tgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgc 202  Q
    ||| ||||||||||| ||||||||| ||||||||||||||||||||||    
T  48963362 tgcgtcccgtggccaacaagtcacaatcatcaccactccctccaacgc 48963315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 56 - 292
Target Start/End: Complemental strand, 48966507 - 48966271
Alignment:
Q  56 aatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaactatgttt 155  Q
    |||||||||||||||| || ||| |||| ||||| || |||||||||||| ||||||| | || |||||||||||| | | ||||||||||||||| |||    
T  48966507 aatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactatcttt 48966408  T
Q  156 gcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgctccttcattccttcgtcttc 255  Q
    ||||| | |||||| ||||||||  ||||||| |||||||| ||||| || | |||| ||||||||||  | |||   | ||||   ||||| ||  |||    
T  48966407 gcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctcttccctccatagatcctctcttcctccgcattc 48966308  T
Q  256 acaccgttgacttcccctcccaacaagtcggcctccc 292  Q
    |||||||||| ||||||| ||||||||| || |||||    
T  48966307 acaccgttgatttcccctaccaacaagttggtctccc 48966271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 12589188 - 12589333
Alignment:
Q  50 ataagaaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaact 149  Q
    ||||| |||| |||| |||||| ||||||||||||| ||| || |||||||||||| |||| || |||| |||||||||||||| | |||||| |||||     
T  12589188 ataagcaatgaaaggcgttgaaattgaacaaccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaacc 12589287  T
Q  150 atgtttgcatcccgtggccagcaagtcacagtcatcaccactccct 195  Q
     ||||||||||||||||||| ||||||||| ||| |||||||||||    
T  12589288 ctgtttgcatcccgtggccaacaagtcacaatcaccaccactccct 12589333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 12482462 - 12482606
Alignment:
Q  56 aatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttctagcatctggacatatgatccctctttttgacatagcaactatgttt 155  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||||||||| |||| |||| |||||||||||| | |   | || |||||| |||||    
T  12482462 aatggaaggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgttt 12482561  T
Q  156 gcatcccgtggccagcaagtcacagtcatcaccactccctccaac 200  Q
    ||||| |||||||| || |||||| ||||||||||||| ||||||    
T  12482562 gcatcacgtggccatcatgtcacaatcatcaccactccttccaac 12482606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 12589375 - 12589436
Alignment:
Q  252 cttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtc 313  Q
    ||||||| ||| || |||||||||| |||||||||||||||||| ||| | |||||| ||||    
T  12589375 cttcacatcgtagatttcccctccctacaagtcggcctccctgacggtgtcgaatctttgtc 12589436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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