View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_7 (Length: 342)
Name: NF10660_low_7
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 36571894 - 36571573
Alignment:
| Q |
19 |
cctaaaggcctacatgtctaccttgaaagacaaggcaaatttggtactaagtggttgttttcccaaacatatctatcacccacttccaaccaccataaaa |
118 |
Q |
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| T |
36571894 |
cctaaaggcctacatgtctaccttgaaagacaaggcaaatttggtactaagtggttgttttcccaaacatatctatcacccacttccaacaaccataaaa |
36571795 |
T |
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| Q |
119 |
taaaattattaccataatctaatctaat-----gtaaggacttatagtcactcacatatggtcgtgaaggtcccacgggttcgtttttcagtctacctct |
213 |
Q |
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| T |
36571794 |
taaaattattaccataatctaatctaatctaatgtaaggacttatagtcactcacatatggtcgtgaaggtcccacgggttcgtttttcagtctacctct |
36571695 |
T |
|
| Q |
214 |
atctaatcaaagtttgttgggaacaaaatcatccactacaatccaacttttgattaagcaaaacagttaggagtatcatacttttcattcatcatgtgtt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571694 |
atctaatcaaagtttgttgggaacaaaatcatccactacaatccaacttttgattaatcaaaacagttaggagtatcatacttttcattcatcatgtgtt |
36571595 |
T |
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| Q |
314 |
ggaaaaaggacctcctttgcta |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
36571594 |
ggaaaaaggacctcctttgcta |
36571573 |
T |
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