View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10660_low_8 (Length: 339)
Name: NF10660_low_8
Description: NF10660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10660_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 3699176 - 3698854
Alignment:
| Q |
18 |
gaagtgatcttcctgccactgtgatacagaaaaaccaaagttaaaaacacatgatacaaagggacgatgcagaa--------actatttctaa-gcaaat |
108 |
Q |
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| T |
3699176 |
gaagtgatcttcctgccactgtgacacagaaaaacaaatgttaaaaacatatgatacaa-gggctgatgcagaatagcataaactatttctaaagcaaag |
3699078 |
T |
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| Q |
109 |
cctaatcacaatataaataaaacacacggatgcataatagcatgaacaactgctaaacaaatgttgttaaaaaactacaagtgaacattaaaatagcttt |
208 |
Q |
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| T |
3699077 |
cc-aatcacaatataaatagaacaca--gatgcagaatagcatgaacaactgctaaacaaatgttgttaaaaaattacaagtgaacattaaaatagcttt |
3698981 |
T |
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| Q |
209 |
tcaatttgagttgcggcttagactaattctactgttactattctcttcatt----gtaacaaccatatttcaaactatagcaaactaacaaggataatga |
304 |
Q |
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| T |
3698980 |
tcaatttgagttgcggcttagactaattctactgttactattctcttcattgctggtaacaaccgtattgtaaactatagcaaactaacaaggataatga |
3698881 |
T |
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| Q |
305 |
gttatttaccccttgatgtccatctca |
331 |
Q |
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| T |
3698880 |
gttatttaccccttggtgtccatctca |
3698854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 3703924 - 3703777
Alignment:
| Q |
18 |
gaagtgatcttcctgccactgtgatacagaaaaa-ccaaagttaaaaacacatgatacaaagggacgatgcagaaactatttctaagcaaatcctaatca |
116 |
Q |
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|||||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703924 |
gaagtgatcttcctgccactgtgatacaaaaaaaaccaatgttaaaaaca--tgatacaaagggacgatgcagaaactatttctaagcaaatcctaatca |
3703827 |
T |
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| Q |
117 |
caatataaataaaacacacggatgcataatagcatgaacaactgctaaac |
166 |
Q |
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| T |
3703826 |
caatataaataaaacacacggatgcataatagcatgaacaactgctaaac |
3703777 |
T |
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