View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_high_10 (Length: 261)
Name: NF10661_high_10
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_high_10 |
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| [»] scaffold0702 (1 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 35171608 - 35171842
Alignment:
| Q |
11 |
aagaaataaaaaccaaactgcatgcacatgacttattgaagtggtaattggaaggcacagattaaataagatagaagaattcatgacaaacataacttga |
110 |
Q |
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| T |
35171608 |
aagaaataaaaaccaaactgca----catgacttattgaagtggtaattggaaggcacagattaaacaagctataagaattcatgacaaacataacttga |
35171703 |
T |
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| Q |
111 |
ccgatcaattcaaagtatcaagtatcagtgaatagttctaaaaactagataaaaacaatga----gtagcaacacatacattgttcaaaataacatatat |
206 |
Q |
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| T |
35171704 |
ccgatcaattcaaagtatcaagtatcagtgaatagttctaaaaactagataaaaacaatgagtaggtagcaacacatacatggttcaaaataacatatat |
35171803 |
T |
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| Q |
207 |
tacaaatgtttgcttggagattaaacaagatgaatgaaa |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35171804 |
tacaaatgtttgcttggagattaaacaagatgaatgaaa |
35171842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 4884 - 5086
Alignment:
| Q |
12 |
agaaataaaaaccaaactgcatgcacatgacttattgaagtggtaattggaaggcacagattaaataagatagaagaattcatgacaaacataacttgac |
111 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
4884 |
agaaataaaaaccaaactgca----catgacttattgaagtggtaattggaaggcacagattaaataagctagaagaattcattacaaacataacttgac |
4979 |
T |
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| Q |
112 |
cgatcaattcaaagtatcaagtatcagtgaatagttctaaaaactagataaaaacaatga----gtagcaacacatacattgttcaaaataacatatatt |
207 |
Q |
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| T |
4980 |
cgatcaattcaaagtatcaagtatcagtgaatagttctaaaaactagataaaaacaatgagtaggtagcaacacatacatggttcaaaataacatatatt |
5079 |
T |
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| Q |
208 |
acaaatg |
214 |
Q |
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|||||| |
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| T |
5080 |
ccaaatg |
5086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 3195 - 3010
Alignment:
| Q |
33 |
tgcacatgacttattgaagtggtaattggaaggcacagattaaataagatagaagaattcatgacaaacataacttgaccgatcaattcaaagtatcaag |
132 |
Q |
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| T |
3195 |
tgcacatgacttattgaagtggtaattggaaggcacagattaaataagctagaagaattcattacaaacataacttgaccgatcaattcaaagtatcaag |
3096 |
T |
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| Q |
133 |
tatcagtgaatagttctaaaaactagataaaaacaatga----gtagcaacacatacattgttcaaaataacatatattacaaatg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
3095 |
tatcagtgaatagttctaaaaactagataaaaacaatgagtaggtagcaacacatacatggttcaaaataacatatattccaaatg |
3010 |
T |
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