View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_high_16 (Length: 227)
Name: NF10661_high_16
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_high_16 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42093664 - 42093432
Alignment:
| Q |
1 |
ttatcattttccttcccaacaacaagtcaacaaacatagttcaaaaaattgatacaaaacgtgtccgtggtccaac------atttctccaaaagtggaa |
94 |
Q |
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| T |
42093664 |
ttatcattttccttcccaacaacaagtcaacaaacatagttcaaaaaattgatacaaaacgtgtccgtggtccaactccaacatttctccaaaagtggaa |
42093565 |
T |
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| Q |
95 |
actaacccccaaaacaacaaaagttaattaaagcaccaattactaaacttaggtgctaatgtagctggtttcagaaccagaacaacgtggcaattgatgt |
194 |
Q |
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| T |
42093564 |
actaacccccaaaacaacacaagttaattaaagcaccaattactaaacttaggtgctaatgtagctggtttgagaaccagaacaacgtggcaattgatgt |
42093465 |
T |
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| Q |
195 |
aaaacactagtaggtgaagaagttgaagtagat |
227 |
Q |
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| T |
42093464 |
aaaacactagtaggtgaagaagttgaagtagat |
42093432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38946806 - 38946694
Alignment:
| Q |
1 |
ttatcattttccttcccaacaacaagtcaacaaacatagttcaaaaaattgatacaaaacgtgtccgtggtccaacatttctccaaaagtggaaactaac |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
38946806 |
ttatcattttccttcccaacaacaagtcaacaatcatagttcaaaagattgatacaaaatgtatctgtggtccaacatttctccaaaagtggaaactaac |
38946707 |
T |
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| Q |
101 |
ccccaaaacaaca |
113 |
Q |
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| T |
38946706 |
ccccaaaacaaca |
38946694 |
T |
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