View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10661_high_5 (Length: 386)
Name: NF10661_high_5
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_high_5 |
 | |
|
| [»] scaffold0048 (2 HSPs) |
| | |
|
| [»] scaffold0545 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 1898152 - 1897783
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctgtgggttttaccgca |
108 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
1898152 |
gatggacatgatggccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggagatgttgaagtctctcagcctgcgggttctactgca |
1898053 |
T |
|
| Q |
109 |
actattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttctt |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1898052 |
actattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcctactggctctcttggttctt |
1897953 |
T |
|
| Q |
209 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttccc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1897952 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttccc |
1897853 |
T |
|
| Q |
309 |
ttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1897852 |
ttttggacatcaacaaacaccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
1897783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 13488964 - 13488876
Alignment:
| Q |
214 |
cctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgca |
302 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||| || |||||||| |
|
|
| T |
13488964 |
cctcctcagtactttatgccgccaggctacccgtggggcatgccgctcgcaactaatgaaggttttcgtcataatgcgccggaaatgca |
13488876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 26728955 - 26728586
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctgtgggttttaccgca |
108 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
26728955 |
gatggacatgatggccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggagatgttgaagtctctcagcctgcgggttctactgca |
26728856 |
T |
|
| Q |
109 |
actattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttctt |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26728855 |
actattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcctactggctctcttggttctt |
26728756 |
T |
|
| Q |
209 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttccc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26728755 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatggcactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttccc |
26728656 |
T |
|
| Q |
309 |
ttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26728655 |
ttttggacatcaacaaacaccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
26728586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 34539146 - 34538777
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctgtgggttttaccgca |
108 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||| ||||||||| | |||||||||||||||||| | ||||||||||||| ||||| |||| ||| ||| |
|
|
| T |
34539146 |
gatggacatgatggccgcacaggcacgagcctctcaagcaaaagtcgttcagactgttcagggagatgttgaagtctctcagcctgctggttctactgca |
34539047 |
T |
|
| Q |
109 |
actattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttctt |
208 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| |
|
|
| T |
34539046 |
actattggtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcttgctggctctcttggttctt |
34538947 |
T |
|
| Q |
209 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttccc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34538946 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagtttcc |
34538847 |
T |
|
| Q |
309 |
ttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34538846 |
ttttggacatcaacaaacaccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
34538777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 16763883 - 16764252
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctgtgggttttaccgca |
108 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||| || | | ||||||||||| | ||||| |||| ||||||| |
|
|
| T |
16763883 |
gatggacatgttggccgcacaggcacaagcctctcaagcaaaagttgttcagactgttcgggcagatgttgaagtctcacagcctgctggttctaccgca |
16763982 |
T |
|
| Q |
109 |
actattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttctt |
208 |
Q |
| |
|
|||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16763983 |
actattggtattacacagcctttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcctgctggctctcttggttctt |
16764082 |
T |
|
| Q |
209 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttccc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16764083 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttttc |
16764182 |
T |
|
| Q |
309 |
ttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16764183 |
ttttggacatcaacaaacaccgttttatcagtccggccagccttgtcctcaggccactatgacctatgct |
16764252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 118 - 378
Target Start/End: Original strand, 23919486 - 23919746
Alignment:
| Q |
118 |
actacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttc-gtcctactggctctcttggttcttctattcct |
216 |
Q |
| |
|
|||||||| || ||||||| | |||||||||||||||||||| |||| ||||||| | | ||||||| ||||||||||| || |||||| || | ||| |
|
|
| T |
23919486 |
actacacaacctttggtgactgagttttcctctggtgatatggcaaacatgtacaatcc-gggtttctgtcctactggcccttttggtttctcattccct |
23919584 |
T |
|
| Q |
217 |
cctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggac |
316 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| | |
|
|
| T |
23919585 |
cctcagtactatatgcctccaggctatccgtggggcatgccactcgcaactaatgaaggtgttcgtcctaatgcaccgaaaatgcagttcccttttggtc |
23919684 |
T |
|
| Q |
317 |
atcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
| ||||||| | ||||||||||| ||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
23919685 |
agcaacaaacatcgttttatcagcccgaccagccttttcctcaggctactatgatctatgct |
23919746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 25770940 - 25771023
Alignment:
| Q |
106 |
gcaactattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcct |
189 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
25770940 |
gcaactattggtactacacagcctttggtgaatcagttttcctctggtgatatgacaaacatgtataattcagggtttcgtcct |
25771023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 25770822 - 25770907
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctg |
94 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||| || | | ||||||||||||| ||||| |
|
|
| T |
25770822 |
gatggacatgatggccgcacaggcacaagcctctcaagcaaaagctgttcagactgttcgggcagatgttgaagtctctcagcctg |
25770907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 27540461 - 27540830
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctgtgggttttaccgca |
108 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||| ||||| |||| ||| ||| |
|
|
| T |
27540461 |
gatggacatgatggccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcaggcagatgttgaagtctctcagcctgctggttctactgca |
27540560 |
T |
|
| Q |
109 |
actattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttctt |
208 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
27540561 |
actattagtgctccacagcccttggtgaatcagttctcctctggtgatatgacaaatatgtataattcagggtttcgtcctgctggctctctcggttctt |
27540660 |
T |
|
| Q |
209 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttccc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |
|
|
| T |
27540661 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtggtcgtcataatgcaccagaaatgcagcttcc |
27540760 |
T |
|
| Q |
309 |
ttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27540761 |
ttttggacatcaacaaacaccgttttatcagtccggccagccttttcctcaggctactatgacctatgct |
27540830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 97 - 378
Target Start/End: Original strand, 25702780 - 25703061
Alignment:
| Q |
97 |
ggttttaccgcaactattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggct |
196 |
Q |
| |
|
|||| ||| ||| ||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| | |||| ||||||||||| ||| | |
|
|
| T |
25702780 |
ggttctactgcagctattagtactacacagcctttggtgactcagttttcctctagtgatatgacaaacatgtataattcaaggtttcgtcctgctgccc |
25702879 |
T |
|
| Q |
197 |
ctcttggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccaga |
296 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
25702880 |
ctcttggtttttctatccctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcgccgga |
25702979 |
T |
|
| Q |
297 |
aatgcagttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
|||||||||||||| || || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25702980 |
aatgcagttcccttcgggtcagcaacaaacaccgttttatcagcccggccagccttttcctcaggccactatgacctatgct |
25703061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 25702633 - 25702708
Alignment:
| Q |
13 |
gacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctc |
88 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||||| |||| ||||||||||||| | ||||||||||||| |
|
|
| T |
25702633 |
gacatgatggccgcacaagcacaagcctctcaagcaaaagttgtgcagactgttcaggctgatgttgaagtctctc |
25702708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 1886792 - 1886423
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctgtgggttttaccgca |
108 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||| || | | ||||||||||| | ||||| |||| ||||||| |
|
|
| T |
1886792 |
gatggacatgttggccgcacaggcacaagcctctcaagcaaaagttgttcagactgttcgggcagatgttgaagtctcacagcctgctggttctaccgca |
1886693 |
T |
|
| Q |
109 |
actattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttctt |
208 |
Q |
| |
|
|||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1886692 |
actattggtattacacagcctttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcctgctggctctcttggttctt |
1886593 |
T |
|
| Q |
209 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttccc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1886592 |
ctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttttc |
1886493 |
T |
|
| Q |
309 |
ttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1886492 |
ttttggacatcaacaaacaccgttttatcagtccggccagccttgtcctcaggccactatgacctatgct |
1886423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 214 - 377
Target Start/End: Complemental strand, 22151078 - 22150915
Alignment:
| Q |
214 |
cctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttg |
313 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
22151078 |
cctcctcagtactgtatgccgccaggctacccgtggggcatgccactcgcaactaatgaaggttttcgtcataatgcgccggaaatgcagttccctcttg |
22150979 |
T |
|
| Q |
314 |
gacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgc |
377 |
Q |
| |
|
| || ||||||| |||||| || ||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
22150978 |
gccagcaacaaacaccgttctaccagaccggccagccttttcctcaggctactatgacttatgc |
22150915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 106 - 378
Target Start/End: Original strand, 4438725 - 4438997
Alignment:
| Q |
106 |
gcaactattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggtt |
205 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||| |
|
|
| T |
4438725 |
gcaactattggtactacacagcctttggtgaatcagttttcctctggtgatatgacaaacatgtataattcagggtttcgtcctgctggctctcttggtt |
4438824 |
T |
|
| Q |
206 |
cttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagtt |
305 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4438825 |
tttatatccctcctcagtatcatatgccgccaggctatccgtggggcatgccactcacaaataatgaaggtgttcgtcataatgcaccggaaatgcagtt |
4438924 |
T |
|
| Q |
306 |
cccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4438925 |
cccttttggtcagcaacaaacaccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
4438997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 106 - 360
Target Start/End: Complemental strand, 18950803 - 18950549
Alignment:
| Q |
106 |
gcaactattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggtt |
205 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||| ||||||||||||||| |
|
|
| T |
18950803 |
gcaactattggtactacacagcctttggtgaatcagttttcctcaggtgatatgacaaacatgtataattcagggtttcgtcctgctggctctcttggtt |
18950704 |
T |
|
| Q |
206 |
cttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagtt |
305 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18950703 |
tttctatccctcctcagtatcatatgccgccaggctatctgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagtt |
18950604 |
T |
|
| Q |
306 |
cccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcag |
360 |
Q |
| |
|
|||| |||| || ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18950603 |
ccctattggtcagcaacaaacaccattttatcagtccggccagccttttcctcag |
18950549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 214 - 378
Target Start/End: Complemental strand, 6968006 - 6967842
Alignment:
| Q |
214 |
cctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttg |
313 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
6968006 |
cctcctcagtactgtatgccgccaggctacccgtggggcatgccgctcgcaactaatgaaggtcttcgtcataatgcgccggaaatgcagttccctcttg |
6967907 |
T |
|
| Q |
314 |
gacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
| || ||||||| |||||| || ||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
6967906 |
gccagcaacaaacaccgttctaccagaccggccagccttttcctcaggctactatgacttatgct |
6967842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 4438607 - 4438692
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctg |
94 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||| || | | ||||||||||||| ||||| |
|
|
| T |
4438607 |
gatggacatgatggccgcacaggcacaagcctctcaagcaaaagctgttcagactgttcgggcagatgttgaagtctctcagcctg |
4438692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 18950921 - 18950863
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttc |
67 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
18950921 |
gatggacatgatggccgcacaggtacaagcctctcaagcaaaagttgttcagactgttc |
18950863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 18879254 - 18879212
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaa |
51 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
18879254 |
gatggacatgatggccgcacaggcacaagcctctcaagcaaaa |
18879212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 106 - 378
Target Start/End: Complemental strand, 20393498 - 20393226
Alignment:
| Q |
106 |
gcaactattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggtt |
205 |
Q |
| |
|
||||||||| | |||||||| || |||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
20393498 |
gcaactattggtactacacaacctttggtgaatcagttttccgctggtgatatgacaaacatgtacaattcagggtttcgtcctgctggctctcttggtt |
20393399 |
T |
|
| Q |
206 |
cttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagtt |
305 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
20393398 |
tttctatcccccctcagtatcatatgccgccaggctatcagtggggaatgccactcgcaaataatgaaggtgttcatcataatgcaccggaaatgcagtt |
20393299 |
T |
|
| Q |
306 |
cccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20393298 |
cccttttggtcagcaacaaacaccgttttatcagtccggccagccttttcctcaggccactatgacctgtgct |
20393226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 214 - 377
Target Start/End: Complemental strand, 356643 - 356480
Alignment:
| Q |
214 |
cctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttg |
313 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
356643 |
cctcctcagtactgtatgccgccaggctacccgtggggcatgccgctcgcaactaatgaaggttttcgtcataatgcgccggaaatgcagttccctcttg |
356544 |
T |
|
| Q |
314 |
gacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgc |
377 |
Q |
| |
|
| || ||||||| |||||| || ||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
356543 |
gccagcaacaaacaccgttctaccagaccggccagccttttcctcaggctactatgacttatgc |
356480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 20393616 - 20393532
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcct |
93 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||| |||||||| |||||||||||||| || | | ||||||||||||| |||| |
|
|
| T |
20393616 |
gatggacatgatggccgcataggcacaagcctcttaagcaaaagctgttcagactgttctggcagatgttgaagtctctcagcct |
20393532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 97 - 378
Target Start/End: Complemental strand, 385 - 104
Alignment:
| Q |
97 |
ggttttaccgcaactattagcactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggct |
196 |
Q |
| |
|
|||| ||| ||| ||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| | ||||||| |||||||| ||||| |
|
|
| T |
385 |
ggttctactgcagctattagtactacacagcctttggtgactcagttttcctctggtgatatgacaaacatgtataattcagggcttcgtcctgctggcc |
286 |
T |
|
| Q |
197 |
ctcttggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccaga |
296 |
Q |
| |
|
||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
285 |
ctcctggtttttctatccctcatcagtatcatatgccgccaggctatccgtggggcatgccgctcgcaactaatgaaggtgttcgtcataatgcgctaga |
186 |
T |
|
| Q |
297 |
aatgcagttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
|| |||||||||||| || || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
185 |
aacgcagttccctttcggtcaacaacaaacaccgttttatcagcccggccagccttttcctcaggccactatgacctatgct |
104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 532 - 451
Alignment:
| Q |
13 |
gacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctccgcctg |
94 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
532 |
gacatgatggccgcacaggcacaagcctctcaagcaaaagttgttcagactgttcaggcggatgttgaagtctctcagcctg |
451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 118 - 378
Target Start/End: Original strand, 13455236 - 13455496
Alignment:
| Q |
118 |
actacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttcttctattcctc |
217 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||| ||||| ||||||| ||||| | |||||||||||||||| ||||| ||||||||| ||||| |||| |
|
|
| T |
13455236 |
actacacagcctttggtgactcaattttcctctagtgatgtgacaaacatgtataattcagggtttcgtcctgctggccctcttggtttttctacccctc |
13455335 |
T |
|
| Q |
218 |
ctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggaca |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| || || |
|
|
| T |
13455336 |
ctcagtatcatatgccaccaggctatccgtggggcatgccactcgcaactaatgaaggtgttcgtcataatgcgccggaaatgcagttcccttcgggtca |
13455435 |
T |
|
| Q |
318 |
tcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
378 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13455436 |
gcaacaaacaccgttttatcagcccggccagccttttcctcaggccaccatgacctatgct |
13455496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 13455110 - 13455185
Alignment:
| Q |
13 |
gacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagggaaaagttgaagtctctc |
88 |
Q |
| |
|
||||| ||||| |||||||||||||| || ||||||||| |||| ||||||||||||| | | ||||||||||||| |
|
|
| T |
13455110 |
gacatgatggccgcacaggcacaagcatctcaagcaaaagttgtgcagactgttcaggcagatgttgaagtctctc |
13455185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0545 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0545
Description:
Target: scaffold0545; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 4920 - 4859
Alignment:
| Q |
9 |
gatggacatcatggcggcacaggcacaagcctcgcaagcaaaaattgttcagactgttcagg |
70 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4920 |
gatggacatgatggccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagg |
4859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University