View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_high_6 (Length: 362)
Name: NF10661_high_6
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 33643344 - 33643003
Alignment:
| Q |
19 |
actatggatctgtgtgataatcttggttaattttatgaaacttaaatcttattatatgattttaaattgctattcattcagatattgccacatcaaatgt |
118 |
Q |
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| T |
33643344 |
actatggatctgtgtgataatcttggttaattttatgaaacttaaatcttattatatgattttaaattgctattcattcagatattgccacatcaaatgt |
33643245 |
T |
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| Q |
119 |
tttagta---atacagaagcacgttttctcaatatttctctagtattattgttctggcagaagcttgcaaaattgcaaatgaagtttaatgtgtttgcta |
215 |
Q |
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| T |
33643244 |
tttagtatatatacagaagcacgttttctcaatatttctctagtattattgttctggcagaagcttgcaaaattgcaaatgaagtttaatgtgtttgcta |
33643145 |
T |
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| Q |
216 |
gaaaataatcaaactatacatgaggaccataacaacacgtaatcaaaactacttatttgaagaatcatcaccctgcaaaatgtagaagtggtccttatat |
315 |
Q |
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| T |
33643144 |
gaaaataatcaaactatacatgaggaccataacaacacgtaatcaaaactacttatttgaagaatcatcaccctgcaaaatgtagaagtggtccttatat |
33643045 |
T |
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| Q |
316 |
tataagactaaatgttttaataacaccgcaacacttagttct |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643044 |
tataagactaaatgttttaataacaccgcaacacttagttct |
33643003 |
T |
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