View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_high_9 (Length: 277)
Name: NF10661_high_9
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 45867036 - 45866781
Alignment:
| Q |
7 |
gttaccttggtgtgtaaaattcactctttagtgtatttgatgcatcggtttcctcttttttgttagctattctattgtgttctattggtaggtagatttt |
106 |
Q |
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| T |
45867036 |
gttaccttggtgtgttaaattcactctttagtgtatttgatgcatcggtttcctcttttttgttagctattctattgtgttctattggtaggtagatttt |
45866937 |
T |
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| Q |
107 |
tgtggatcaactaaatattatgaaaaagttatttcttgagttgtgcaccaaatgctggcaactgagaagatattttccatgaaaccaacggggcatcaag |
206 |
Q |
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| T |
45866936 |
tgtggatcaactaaatattatgaaaaagttatttcttgagttgtgcaccaaatgctggcaactgagaagatattttccatgaaaccaacggggcatcaag |
45866837 |
T |
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| Q |
207 |
tgctctcgtggagccttaaaaacaaaataagtatacttcttattttgctttctgtg |
262 |
Q |
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| T |
45866836 |
tgctctcgtggagccttaaaaagaaaataagtatacttcttattttgctttctgtg |
45866781 |
T |
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Back To:
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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 17403261 - 17403308
Alignment:
| Q |
148 |
tgtgcaccaaatgctggcaactgagaagatattttccatgaaaccaac |
195 |
Q |
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| T |
17403261 |
tgtgcaccaaatgctggcaactgagaagatattttccatgaaatcaac |
17403308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 4056307 - 4056228
Alignment:
| Q |
30 |
ctctttagtgtatttgatgcatcggtttcctcttttttgttagctattctattgtgttctattggtaggtagatttttgt |
109 |
Q |
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|||||| |||||||||||| ||||||||||| ||| |||| ||| |||||| || ||||||||||||||||| |||||| |
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| T |
4056307 |
ctctttggtgtatttgatgtgtcggtttcctcgtttctgttggctcttctatggtattctattggtaggtagaattttgt |
4056228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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