View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10661_low_1 (Length: 546)
Name: NF10661_low_1
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 35688823 - 35688436
Alignment:
| Q |
18 |
tgaaccatacaaaccattgattcccactggtttctattcaacgagtctccaacaaacattaacctcttccctctaatcttcttaaacaacaatcttggct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35688823 |
tgaaccatacaaaccattgattcccactggtttctattcaaagagtctccaacaaacattaacctcttccctctaatcttcttaaacaacaatcttggct |
35688724 |
T |
|
| Q |
118 |
tgaaccttaaattaagtacacaaaaatgcaatcgttaagaataataatattcatcaacaaaattggataattcaaagaattgaaaagnnnnnnnnnntgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
35688723 |
tgaaccttaaattaagtacacaaaaatgcaatcattaagaataaaaatattcatcaacaaaattggataattcaaagagatgaaaa-----aaatattgc |
35688629 |
T |
|
| Q |
218 |
atactttggcattgagcaatcttttggctgccatttccaattctgatacaaagaatcacgtcttccattcctcatacatgtaacttgagaagtgagaaat |
317 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35688628 |
atactttggcatagaacagtcttttggctgccatttccaattctgatacaaagaatcacgtcttccattcctcatacatgtaacttgagaagtgagaaac |
35688529 |
T |
|
| Q |
318 |
tcacattcatcttctttatacaaaggatgtgtcacgttatctaaaacccatttaccattgaacaagtcacactcttttggtggcaactcaacc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35688528 |
tcacattcatcttctttatacaaaggatgtgtcacgttatctaaaacccatttaccattgaacaagtcacaatcttttggtggcaactcaacc |
35688436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 482 - 539
Target Start/End: Complemental strand, 35688364 - 35688307
Alignment:
| Q |
482 |
caccttaacacgttcttgtggctcatcagaatcttcatcatcatcaacattcttctca |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35688364 |
caccttaacacgttcttgtggctcatcagaatcttcatcatcatcaacactcttctca |
35688307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 234 - 370
Target Start/End: Complemental strand, 31821706 - 31821570
Alignment:
| Q |
234 |
caatcttttggctgccatttccaattctgatacaaagaatcacgtcttccattcctcatacatgtaacttgagaagtgagaaattcacattcatcttctt |
333 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
31821706 |
caatctcttggctgccacctccaattctgatacaaagaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttcttctt |
31821607 |
T |
|
| Q |
334 |
tatacaaaggatgtgtcacgttatctaaaacccattt |
370 |
Q |
| |
|
| || |||||||||||||| ||||| | ||||||||| |
|
|
| T |
31821606 |
tgtataaaggatgtgtcacattatcaagaacccattt |
31821570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 31821919 - 31821838
Alignment:
| Q |
18 |
tgaaccatacaaaccattgattcccactggtttctattcaacgagtctccaacaaacattaacctcttccctctaatcttct |
99 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||| |||||||| ||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
31821919 |
tgaaccaaacaaatcattgattcccattggttcctattcaatgagtctccaacaaacataagcctcttccctctaagcttct |
31821838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University