View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_11 (Length: 380)
Name: NF10661_low_11
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 5946245 - 5946620
Alignment:
| Q |
1 |
tcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttttccatgagatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946245 |
tcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttttccatgagatat |
5946344 |
T |
|
| Q |
101 |
ctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagcaccatcgtctcca |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946345 |
ctttacagaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagcaccatcgtctcca |
5946444 |
T |
|
| Q |
201 |
tcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacatgggcagctaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946445 |
tcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacatgggcagctaaaa |
5946544 |
T |
|
| Q |
301 |
tatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcgggcctatgctt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5946545 |
tatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcaggcctatgctt |
5946620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 31717277 - 31716902
Alignment:
| Q |
1 |
tcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttttccatgagatat |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
31717277 |
tcttaggtaccggtatcttcctccaagcaagaagcttcaaaagcgttgacttgcccattccattcggcccaatcaaaccataacgttttccatgggatat |
31717178 |
T |
|
| Q |
101 |
ctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagcaccatcgtctcca |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31717177 |
cttcactgaagtattcttcagaagttctttaccccgagcagccacagaaaaattttctatcgttatatctttgacattagcatcagcaccatcgtctcca |
31717078 |
T |
|
| Q |
201 |
tcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacatgggcagctaaaa |
300 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31717077 |
tcaagcactgaagcccgacttccaattacaacagtgaaagcatcacgatcatccctaagagcttccttctttgcctgttcagccacatgggcagctaaaa |
31716978 |
T |
|
| Q |
301 |
tatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcgggcctatgctt |
376 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31716977 |
tatctttcttttctcgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatctggcctatgctt |
31716902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 28619021 - 28619378
Alignment:
| Q |
1 |
tcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttttccatgagatat |
100 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28619021 |
tcttaggtactggtatcttcctccaagcaagaagcttcaaaagtgttgacttgcccattccattcggcccaagcaaaccataccgttttccatgagatat |
28619120 |
T |
|
| Q |
101 |
ctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagcaccatcgtctcca |
200 |
Q |
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||| ||||| | |||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
28619121 |
cttcactgacgcattcttcagaagttctttgccacgagcagacacagaaaatttatctatcattatatctttgacattagcattagcaccatcgtctcca |
28619220 |
T |
|
| Q |
201 |
tcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacatgggcagctaaaa |
300 |
Q |
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||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
28619221 |
tcaagaaccgaagcccgacttccaatgacaacagtgaaagcatcacgatcatctttaagagcttctttttttgcctgttcagccaaatgggcagctaaaa |
28619320 |
T |
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| Q |
301 |
tatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggctt |
358 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28619321 |
tatctttcttttcacgctttttcaactcttttgcagcaatagacacctcaagtggctt |
28619378 |
T |
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