View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10661_low_12 (Length: 376)

Name: NF10661_low_12
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10661_low_12
NF10661_low_12
[»] chr3 (4 HSPs)
chr3 (17-376)||(51199946-51200305)
chr3 (87-137)||(52708625-52708675)
chr3 (87-135)||(22508738-22508786)
chr3 (87-139)||(45267304-45267356)
[»] chr4 (1 HSPs)
chr4 (87-137)||(19674415-19674465)
[»] chr6 (1 HSPs)
chr6 (87-148)||(21165236-21165297)
[»] chr1 (6 HSPs)
chr1 (88-137)||(48334141-48334190)
chr1 (87-137)||(9774896-9774946)
chr1 (91-137)||(24427381-24427427)
chr1 (87-137)||(37396848-37396898)
chr1 (87-137)||(50164404-50164454)
chr1 (87-147)||(27264224-27264284)
[»] chr8 (5 HSPs)
chr8 (87-143)||(10718456-10718512)
chr8 (87-137)||(10717122-10717172)
chr8 (87-137)||(36588223-36588273)
chr8 (87-137)||(39440430-39440480)
chr8 (87-136)||(3483635-3483684)
[»] chr7 (3 HSPs)
chr7 (88-147)||(39619800-39619859)
chr7 (88-137)||(24197112-24197161)
chr7 (87-135)||(11217079-11217127)
[»] scaffold0517 (1 HSPs)
scaffold0517 (87-137)||(10316-10366)
[»] scaffold0095 (1 HSPs)
scaffold0095 (87-137)||(42763-42813)
[»] scaffold0001 (1 HSPs)
scaffold0001 (87-137)||(119594-119644)
[»] chr2 (1 HSPs)
chr2 (87-137)||(1777470-1777520)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 51199946 - 51200305
Alignment:
Q  17 tgaactggaggactcaaaaatatgcattggaggaaaatgctagagggcttnnnnnnntagacattacaacgaccaaaactcgaactcgctatatttgtat 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||    
T  51199946 tgaactggaggactcaaaaatatgcattggaagaaaatgctagagggcttaaaaaaatagacattacagcgaccaaaactcgaactcgctatatttgtat 51200045  T
Q  117 ggaccaaatgcatattttagcttatatataaaaagatagtttatatgattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaattg 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51200046 ggaccaaatgcatatttaagcttatatataaaaagatagtttatataattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaatcg 51200145  T
Q  217 aaataaacgatggaggtcgttttattgtgagaaatagagtttaaaatataaactttccgatctcaaatcaatgattgagaaccacctgaaaacactataa 316  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51200146 aaataaacgatcgaggtcgttttattgtgagaaatagagtttaaaatataaactgtccgatctcaaatcaatgattgagaaccacctgaaaacactataa 51200245  T
Q  317 caatgaatacaggtccatctaagttgacctgctaaaaatccatgtattattcgtttgtgt 376  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51200246 caatgaatacaggtccatctaagttgacctgttaaaaatccatgtattattcgtttgtgt 51200305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 52708625 - 52708675
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  52708625 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 52708675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 22508786 - 22508738
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 135  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||    
T  22508786 gaccaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 45267356 - 45267304
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagctt 139  Q
    ||||||||||| ||||||||||||||| | ||| ||||  |||||||||||||    
T  45267356 gaccaaaactcaaactcgctatatttgcagggatcaaaaacatattttagctt 45267304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 19674465 - 19674415
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||||| ||||||||||||||| | |||||||| ||||||||||||    
T  19674465 gaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagc 19674415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 21165297 - 21165236
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataaa 148  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||  |||||||||    
T  21165297 gaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagccaatatataaa 21165236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 48334141 - 48334190
Alignment:
Q  88 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    |||||||||| || |||||||||||||| |||||||| ||||||||||||    
T  48334141 accaaaactcaaattcgctatatttgtagggaccaaaagcatattttagc 48334190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 9774896 - 9774946
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  9774896 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 9774946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 24427381 - 24427427
Alignment:
Q  91 aaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  24427381 aaaactcaaactcgctatatttgtagggaccaaaaacatattttagc 24427427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 37396848 - 37396898
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  37396848 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 37396898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 50164454 - 50164404
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  50164454 gaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagc 50164404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 27264224 - 27264284
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 147  Q
    ||||||||| | ||||||||||||||| | ||||||||  ||||||||||| |||| ||||    
T  27264224 gaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctataaataa 27264284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 10718456 - 10718512
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatat 143  Q
    ||||||||| | ||||||||||||||| | |||||||| |||||||||||| |||||    
T  10718456 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctatat 10718512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 10717172 - 10717122
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  10717172 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 10717122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 36588273 - 36588223
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  36588273 gaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagc 36588223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 39440430 - 39440480
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  39440430 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 39440480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 3483684 - 3483635
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttag 136  Q
    ||||||||||| ||||||||||||||| | ||||||||  ||||||||||    
T  3483684 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 39619800 - 39619859
Alignment:
Q  88 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 147  Q
    |||||||| | ||||||| ||||||| |||||||||| |||||||||||| ||| |||||    
T  39619800 accaaaacccaaactcgccatatttgcatggaccaaaagcatattttagcctatttataa 39619859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 24197112 - 24197161
Alignment:
Q  88 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    |||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  24197112 accaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 24197161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 11217079 - 11217127
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 135  Q
    |||||||| || ||||||||||||||| | |||||||| ||||||||||    
T  11217079 gaccaaaattcaaactcgctatatttgcagggaccaaaagcatatttta 11217127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 10366 - 10316
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  10366 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 10316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 42763 - 42813
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  42763 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 42813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 119644 - 119594
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  119644 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 119594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 1777520 - 1777470
Alignment:
Q  87 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 137  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||||    
T  1777520 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagc 1777470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University