View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_17 (Length: 312)
Name: NF10661_low_17
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 1418668 - 1418744
Alignment:
| Q |
81 |
tataatataatgttcggaatcggttcatatttgatgaattgttgaaccgacttgaattgtttaaaagctaaaaattg |
157 |
Q |
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| T |
1418668 |
tataatataatgttcggaaccggttcatatttgatgaattgttgaaccgacttgaattgtttaaaagctaaaaattg |
1418744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 1418893 - 1418955
Alignment:
| Q |
240 |
attttaggtatttctttcacaatgcacattgcctttgacaccatatgactgactatattcatc |
302 |
Q |
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| T |
1418893 |
attttaggtctttctttcacaatgcacattgcctttgacaccatatgactgactatattcatc |
1418955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 1418627 - 1418664
Alignment:
| Q |
19 |
agtaatttgttgtttataaaagagatccatttacgtat |
56 |
Q |
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| T |
1418627 |
agtaatttgttgtttataaaagagatccatttacgtat |
1418664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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