View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_20 (Length: 296)
Name: NF10661_low_20
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 43954606 - 43954341
Alignment:
| Q |
18 |
caactttttgtttatcatgactaagttgcatgtagatcctaataaactagagggat--gaataaacnnnnnnnnnn-gcgaaagtctgaattattataaa |
114 |
Q |
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| T |
43954606 |
caactttttgtttatcatgactaagttgcatgtagatcctaataaactagagggatatgaataaacaaaaaaaaaatgcgaaagtctgaattattataaa |
43954507 |
T |
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| Q |
115 |
ttaatgttagtttctaatgaacatatttatatgaatcaatcaatactaattaaaatgaactgtactttggaataccaaacaacctcaaaggcttctatct |
214 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43954506 |
ttaatgttagtttctaatgaacatatttatatcaatcaatcaatactaattaaaatgaactgtactttggaataccaaacaaactcaaaggcttctatct |
43954407 |
T |
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| Q |
215 |
ttttcttcatatgcataactgaagct-tatcacacagtacttccacagaagttatgagctatcaccattcat |
285 |
Q |
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|||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |
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| T |
43954406 |
ttttcttcatatgcataactgaagctcgatca------acttctacagaagttatgagctatcaccattcat |
43954341 |
T |
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