View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10661_low_23 (Length: 293)

Name: NF10661_low_23
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10661_low_23
NF10661_low_23
[»] chr8 (4 HSPs)
chr8 (18-287)||(28747404-28747674)
chr8 (233-262)||(13844590-13844619)
chr8 (233-261)||(33405379-33405407)
chr8 (233-261)||(43737806-43737834)
[»] chr6 (3 HSPs)
chr6 (215-261)||(7265588-7265634)
chr6 (233-274)||(21924917-21924958)
chr6 (233-261)||(5732505-5732533)
[»] chr3 (6 HSPs)
chr3 (215-261)||(8789545-8789591)
chr3 (233-261)||(2941594-2941622)
chr3 (233-261)||(7928486-7928514)
chr3 (233-261)||(13845520-13845548)
chr3 (233-261)||(25093538-25093566)
chr3 (233-261)||(40993330-40993358)
[»] chr2 (4 HSPs)
chr2 (215-261)||(20242722-20242768)
chr2 (233-261)||(5367228-5367256)
chr2 (233-261)||(34691800-34691828)
chr2 (233-261)||(34714212-34714240)
[»] chr1 (5 HSPs)
chr1 (215-261)||(9709838-9709884)
chr1 (215-261)||(30749858-30749904)
chr1 (215-261)||(30771309-30771355)
chr1 (233-261)||(39130762-39130790)
chr1 (233-261)||(52903285-52903313)
[»] chr7 (3 HSPs)
chr7 (233-261)||(18213028-18213056)
chr7 (233-261)||(20549827-20549855)
chr7 (230-274)||(28155603-28155647)
[»] chr5 (2 HSPs)
chr5 (233-261)||(30502383-30502411)
chr5 (233-261)||(30542726-30542754)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 28747674 - 28747404
Alignment:
Q  18 cattgaaggacatttttgaataaacattagcacatatgtaggcacccttgtctggtatgtcattttgtgggccatggcttaataaaaaagggtgatgtat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28747674 cattgaaggacatttttgaataaacattagcacatatgtaggcacccttgtctggtatgtcattttgtgggccatggcttaataaaaaagggtgatgtat 28747575  T
Q  118 aaatgacaaaatccacttaaaaactactagcacctagcaccaacacaccaacacttcggatctataaagcaagacgccgacactgctaa-nnnnnnnnag 216  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||         ||    
T  28747574 aaatgacaaaatccacgtaaaaactactagcacctagcaccaacacaccaacactttggatctataaagcaagacgccgacactactaatttttttttag 28747475  T
Q  217 aaaatcagatagctcggtgtaattatatgtgtcggtgtcggacactaggacacacctattttctctgcttc 287  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28747474 aaaatcagatagctcaatgtaattatatgtgtcggtgtcggacactaggacacacctattttctgtgcttc 28747404  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 13844619 - 13844590
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacact 262  Q
    ||||||||||||||||||||||||||||||    
T  13844619 gtgtaattatatgtgtcggtgtcggacact 13844590  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 33405407 - 33405379
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  33405407 gtgtaattatatgtgtcggtgtcggacac 33405379  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 43737834 - 43737806
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  43737834 gtgtaattatatgtgtcggtgtcggacac 43737806  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 7265634 - 7265588
Alignment:
Q  215 agaaaatcagatagctcggtgtaattatatgtgtcggtgtcggacac 261  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||    
T  7265634 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7265588  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 21924958 - 21924917
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacactaggacacaccta 274  Q
    |||||||||||||||||||||||||||||  |||||| ||||    
T  21924958 gtgtaattatatgtgtcggtgtcggacaccgggacacgccta 21924917  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 5732533 - 5732505
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  5732533 gtgtaattatatgtgtcggtgtcggacac 5732505  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 8789591 - 8789545
Alignment:
Q  215 agaaaatcagatagctcggtgtaattatatgtgtcggtgtcggacac 261  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||    
T  8789591 agaaaatcacataattccgtgtaattatatgtgtcggtgtcggacac 8789545  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 2941594 - 2941622
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  2941594 gtgtaattatatgtgtcggtgtcggacac 2941622  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 7928486 - 7928514
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  7928486 gtgtaattatatgtgtcggtgtcggacac 7928514  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 13845548 - 13845520
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  13845548 gtgtaattatatgtgtcggtgtcggacac 13845520  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 25093538 - 25093566
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  25093538 gtgtaattatatgtgtcggtgtcggacac 25093566  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 40993358 - 40993330
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  40993358 gtgtaattatatgtgtcggtgtcggacac 40993330  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 20242768 - 20242722
Alignment:
Q  215 agaaaatcagatagctcggtgtaattatatgtgtcggtgtcggacac 261  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||    
T  20242768 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 20242722  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 5367228 - 5367256
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  5367228 gtgtaattatatgtgtcggtgtcggacac 5367256  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 34691828 - 34691800
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  34691828 gtgtaattatatgtgtcggtgtcggacac 34691800  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 34714240 - 34714212
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  34714240 gtgtaattatatgtgtcggtgtcggacac 34714212  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 9709838 - 9709884
Alignment:
Q  215 agaaaatcagatagctcggtgtaattatatgtgtcggtgtcggacac 261  Q
    ||||||||| |||  ||| ||||||||||||||||||||||||||||    
T  9709838 agaaaatcacataattcgttgtaattatatgtgtcggtgtcggacac 9709884  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 30749858 - 30749904
Alignment:
Q  215 agaaaatcagatagctcggtgtaattatatgtgtcggtgtcggacac 261  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||    
T  30749858 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 30749904  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 30771309 - 30771355
Alignment:
Q  215 agaaaatcagatagctcggtgtaattatatgtgtcggtgtcggacac 261  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||    
T  30771309 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 30771355  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 39130790 - 39130762
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  39130790 gtgtaattatatgtgtcggtgtcggacac 39130762  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 52903285 - 52903313
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  52903285 gtgtaattatatgtgtcggtgtcggacac 52903313  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 18213056 - 18213028
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  18213056 gtgtaattatatgtgtcggtgtcggacac 18213028  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 20549827 - 20549855
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  20549827 gtgtaattatatgtgtcggtgtcggacac 20549855  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 28155603 - 28155647
Alignment:
Q  230 tcggtgtaattatatgtgtcggtgtcggacactaggacacaccta 274  Q
    |||||||||||| | ||||||||||||||||| ||||||| ||||    
T  28155603 tcggtgtaattacaagtgtcggtgtcggacaccaggacacgccta 28155647  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 30502411 - 30502383
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  30502411 gtgtaattatatgtgtcggtgtcggacac 30502383  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 30542754 - 30542726
Alignment:
Q  233 gtgtaattatatgtgtcggtgtcggacac 261  Q
    |||||||||||||||||||||||||||||    
T  30542754 gtgtaattatatgtgtcggtgtcggacac 30542726  T

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