View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_24 (Length: 281)
Name: NF10661_low_24
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 45541595 - 45541358
Alignment:
| Q |
20 |
tttatctccatctttcgatcttcaaaataatgaacacnnnnnnntaa-ttaaatagtttactcaatggcaactcaactaagcatatcatgcaattataat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
45541595 |
tttatctccatctttcgatcttcaaaataatgaacacaaaaaaaaaaattaaatagtttgcccaatggcaactcaactaagcatatcatgcaatt----g |
45541500 |
T |
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| Q |
119 |
taatacatacaaaaaggtggtaagtgattgaagcttacgttttaaaagcgtaggatcctgtgctaccatgtgactgatgtcgagaattagattttttatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45541499 |
taatacatacaaaaaggtggtaagtgattgaagcttacgttttaaaagcgtaggatcctgtgctaccatgtgactgatgtcgagaattagattttttatc |
45541400 |
T |
|
| Q |
219 |
ttcctttttaacaacatactttgtagtttgactactctccat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45541399 |
ttcctttttaacaacatactttgtagtttgactactctccat |
45541358 |
T |
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