View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10661_low_25 (Length: 277)
Name: NF10661_low_25
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 45867036 - 45866781
Alignment:
| Q |
7 |
gttaccttggtgtgtaaaattcactctttagtgtatttgatgcatcggtttcctcttttttgttagctattctattgtgttctattggtaggtagatttt |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45867036 |
gttaccttggtgtgttaaattcactctttagtgtatttgatgcatcggtttcctcttttttgttagctattctattgtgttctattggtaggtagatttt |
45866937 |
T |
|
| Q |
107 |
tgtggatcaactaaatattatgaaaaagttatttcttgagttgtgcaccaaatgctggcaactgagaagatattttccatgaaaccaacggggcatcaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45866936 |
tgtggatcaactaaatattatgaaaaagttatttcttgagttgtgcaccaaatgctggcaactgagaagatattttccatgaaaccaacggggcatcaag |
45866837 |
T |
|
| Q |
207 |
tgctctcgtggagccttaaaaacaaaataagtatacttcttattttgctttctgtg |
262 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45866836 |
tgctctcgtggagccttaaaaagaaaataagtatacttcttattttgctttctgtg |
45866781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 17403261 - 17403308
Alignment:
| Q |
148 |
tgtgcaccaaatgctggcaactgagaagatattttccatgaaaccaac |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17403261 |
tgtgcaccaaatgctggcaactgagaagatattttccatgaaatcaac |
17403308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 4056307 - 4056228
Alignment:
| Q |
30 |
ctctttagtgtatttgatgcatcggtttcctcttttttgttagctattctattgtgttctattggtaggtagatttttgt |
109 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||| |||| ||| |||||| || ||||||||||||||||| |||||| |
|
|
| T |
4056307 |
ctctttggtgtatttgatgtgtcggtttcctcgtttctgttggctcttctatggtattctattggtaggtagaattttgt |
4056228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University