View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10661_low_28 (Length: 257)

Name: NF10661_low_28
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10661_low_28
NF10661_low_28
[»] chr1 (2 HSPs)
chr1 (147-242)||(3915797-3915892)
chr1 (1-71)||(3915651-3915721)
[»] chr6 (1 HSPs)
chr6 (163-242)||(34959409-34959488)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 3915797 - 3915892
Alignment:
Q  147 atttacttggtttgaaataaaatgtaggagacttgaaaacaatgacttaactggggacgtgacatcgcttgtaaattgtcttagtctctctctgct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3915797 atttacttggtttgaaataaaatgtaggagacttgaaaacaatgacttaactggggacgtgacatcacttgtaaattgtcttagtctctctctgct 3915892  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3915651 - 3915721
Alignment:
Q  1 ccataaccaactctctgagatgattcctgtagaacttggtcagcttcagagcatagcatcattgtaagctg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915651 ccataaccaactctctgagatgattcctgtagaacttggtcagcttcagagcatagcatcattgtaagctg 3915721  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 34959488 - 34959409
Alignment:
Q  163 ataaaatgtaggagacttgaaaacaatgacttaactggggacgtgacatcgcttgtaaattgtcttagtctctctctgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  34959488 ataaaatgtaggagacttgaaaacaatgacttaactggggacgtgacgtcgcttgtaaactgtcgtagtctctctctgct 34959409  T

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