View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10661_low_29 (Length: 250)

Name: NF10661_low_29
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10661_low_29
NF10661_low_29
[»] chr4 (5 HSPs)
chr4 (1-111)||(44649962-44650072)
chr4 (169-207)||(44650130-44650168)
chr4 (206-240)||(21351352-21351386)
chr4 (205-240)||(22118268-22118303)
chr4 (206-240)||(36518420-36518454)
[»] chr6 (3 HSPs)
chr6 (201-240)||(35039088-35039127)
chr6 (205-239)||(18310006-18310040)
chr6 (205-239)||(17936979-17937013)
[»] chr5 (3 HSPs)
chr5 (205-240)||(20745700-20745735)
chr5 (206-240)||(20337169-20337203)
chr5 (206-240)||(17994795-17994829)
[»] chr1 (1 HSPs)
chr1 (206-240)||(44404658-44404692)
[»] chr2 (1 HSPs)
chr2 (207-240)||(5250322-5250355)
[»] chr3 (3 HSPs)
chr3 (207-240)||(50736612-50736645)
chr3 (207-240)||(50776210-50776243)
chr3 (206-238)||(16339284-16339316)
[»] chr7 (2 HSPs)
chr7 (212-240)||(17470775-17470803)
chr7 (212-240)||(17582411-17582439)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 44649962 - 44650072
Alignment:
Q  1 catgtttacgaggtcagggttttcgtttgggtatagaattggaggacatgaaatcgacctctataaaccattttcatgtatcaaacagccgcaacaagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  44649962 catgtttacgaggtcagggttttcgtttgggtatagaattggaggacatgaaatcgacctctatcaaccattttcatgtataaaacagccgcaacaagat 44650061  T
Q  101 gtaacacctcc 111  Q
    |||||||||||    
T  44650062 gtaacacctcc 44650072  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 44650130 - 44650168
Alignment:
Q  169 ctttgacataatctccttagaaaagtcactattttgtat 207  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44650130 ctttgacataatctccttagaaaagtcactattttgtat 44650168  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 21351352 - 21351386
Alignment:
Q  206 atctacttactatattataaaattaaatgcctatg 240  Q
    |||||||||||||||||||||||||||||||||||    
T  21351352 atctacttactatattataaaattaaatgcctatg 21351386  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 22118303 - 22118268
Alignment:
Q  205 tatctacttactatattataaaattaaatgcctatg 240  Q
    |||||||||||||||||||||||||||||| |||||    
T  22118303 tatctacttactatattataaaattaaatgtctatg 22118268  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 36518454 - 36518420
Alignment:
Q  206 atctacttactatattataaaattaaatgcctatg 240  Q
    ||||||||||||||||| |||||||||||||||||    
T  36518454 atctacttactatattacaaaattaaatgcctatg 36518420  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 35039088 - 35039127
Alignment:
Q  201 tttgtatctacttactatattataaaattaaatgcctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35039088 tttgtatctacttactatattataaaattaaatgcctatg 35039127  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 18310006 - 18310040
Alignment:
Q  205 tatctacttactatattataaaattaaatgcctat 239  Q
    |||||||||||||||||||||||||||||||||||    
T  18310006 tatctacttactatattataaaattaaatgcctat 18310040  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 17936979 - 17937013
Alignment:
Q  205 tatctacttactatattataaaattaaatgcctat 239  Q
    ||||||||| |||||||||||||||||||||||||    
T  17936979 tatctacttgctatattataaaattaaatgcctat 17937013  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 20745700 - 20745735
Alignment:
Q  205 tatctacttactatattataaaattaaatgcctatg 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  20745700 tatctacttactatattataaaattaaatgcctatg 20745735  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 20337169 - 20337203
Alignment:
Q  206 atctacttactatattataaaattaaatgcctatg 240  Q
    |||||||||||||||||||||||||||||||||||    
T  20337169 atctacttactatattataaaattaaatgcctatg 20337203  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 17994795 - 17994829
Alignment:
Q  206 atctacttactatattataaaattaaatgcctatg 240  Q
    ||||||||||||||||||||| |||||||||||||    
T  17994795 atctacttactatattataaagttaaatgcctatg 17994829  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 44404658 - 44404692
Alignment:
Q  206 atctacttactatattataaaattaaatgcctatg 240  Q
    |||||||||||||||||||||||||||||||||||    
T  44404658 atctacttactatattataaaattaaatgcctatg 44404692  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 5250322 - 5250355
Alignment:
Q  207 tctacttactatattataaaattaaatgcctatg 240  Q
    ||||||||||||||||||||||||||||||||||    
T  5250322 tctacttactatattataaaattaaatgcctatg 5250355  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 50736612 - 50736645
Alignment:
Q  207 tctacttactatattataaaattaaatgcctatg 240  Q
    |||||||||||||||||||||||||||| |||||    
T  50736612 tctacttactatattataaaattaaatgtctatg 50736645  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 50776243 - 50776210
Alignment:
Q  207 tctacttactatattataaaattaaatgcctatg 240  Q
    |||||||||||||||||||||||||||| |||||    
T  50776243 tctacttactatattataaaattaaatgtctatg 50776210  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 16339284 - 16339316
Alignment:
Q  206 atctacttactatattataaaattaaatgccta 238  Q
    |||||||||||||||||||||||||||| ||||    
T  16339284 atctacttactatattataaaattaaattccta 16339316  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 17470775 - 17470803
Alignment:
Q  212 ttactatattataaaattaaatgcctatg 240  Q
    |||||||||||||||||||||||||||||    
T  17470775 ttactatattataaaattaaatgcctatg 17470803  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 17582439 - 17582411
Alignment:
Q  212 ttactatattataaaattaaatgcctatg 240  Q
    |||||||||||||||||||||||||||||    
T  17582439 ttactatattataaaattaaatgcctatg 17582411  T

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