View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_30 (Length: 250)
Name: NF10661_low_30
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39775738 - 39775977
Alignment:
| Q |
1 |
cttaccaattgttgacaatgacgaagattttttccacttaccaattcaaagctatcgtataaaacaacgtaaccagacaagggatgtttgtttgtttctt |
100 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39775738 |
cttaccaattgtcgacaatgacgaagatattttccacttaccaattcaaagctatcgtataaaacaacgtaaccagacaagggatttttgtttgtttctt |
39775837 |
T |
|
| Q |
101 |
acgtaaaggatgtgtatgctaagtgattacgtcatcaatgcgcccaagcaaatcctcctcgtgcatcagacgatgatccataaatcacgcttagttagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775838 |
acgtaaaggatgtgtatgctaagtgattacgtcatcaatgcgcccaagcaaatcctcctcgtgcatcagacgatgatccataaatcacgcttagttagaa |
39775937 |
T |
|
| Q |
201 |
tccttagcgggttcaaggacttttcccaaattctcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
39775938 |
tccttagcgggttcaaggacttttcccaaattctcctatg |
39775977 |
T |
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