View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_31 (Length: 250)
Name: NF10661_low_31
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34697250 - 34697490
Alignment:
| Q |
1 |
gggaaatggcttctgtgccaaggagaaagaagtcgttgcaatgctccatgctggcaataactccattgcctttgaaatgtttcttcactgatgaggttag |
100 |
Q |
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| T |
34697250 |
gggaaatggcttctgtgccaaggagaaagaagtcgttgcaatgctccatgctggcaataactccattgccattgaaatgtttcttcactgatgaggtcag |
34697349 |
T |
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| Q |
101 |
tgctttgtaataggctttagcaagctcaacacgtccaccatactcctctgatagcatctcaagcaactgcaaaaggaaaataaacc-aaatgttatgttg |
199 |
Q |
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| T |
34697350 |
tgctttgtaataggctttagcaagctcaacacgtccaccatactcctctgatagcatctcaagcaactgcaaaaggaaaataaaccgaaatgttatgttg |
34697449 |
T |
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| Q |
200 |
agcttcgaaatcatctaaacaatatatatataactcctatg |
240 |
Q |
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| T |
34697450 |
agcttcgaaatcatctaaacaatatatatataactcctatg |
34697490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 43638230 - 43638387
Alignment:
| Q |
3 |
gaaatggcttctgtgccaaggagaaagaagtcgttgcaatgctccatgctggcaataactccattgcctttgaaatgtttcttcactgatgaggttagtg |
102 |
Q |
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| T |
43638230 |
gaaatggtttctgtaccaaggaacatgaaatcgttgcattgttgcatactggaaatgacaccattgcctttgaaatgtttcctcacggaatcagttagtg |
43638329 |
T |
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| Q |
103 |
ctttgtaataggctttagcaagctcaacacgtccaccatactcctctgatagcatctc |
160 |
Q |
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| T |
43638330 |
ccttgtagtacgcttttgcaagctcaactcgaccaccatattcctcagacagcatctc |
43638387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 488484 - 488376
Alignment:
| Q |
36 |
ttgcaatgctccatgctggcaataactccattgcctttgaaatgtttcttcactgatgaggttagtgctttgtaataggctttagcaagctcaacacgtc |
135 |
Q |
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|||||||| |||||||| ||||| || ||||| || ||||||||||| |||||||| | | || ||||||||||| ||||| || | ||||| | || |
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| T |
488484 |
ttgcaatgttccatgctagcaatgacaccattaccattgaaatgttttttcactgaagttgagagagctttgtaatatgctttggccaaatcaactcttc |
488385 |
T |
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| Q |
136 |
caccatact |
144 |
Q |
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||||||||| |
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| T |
488384 |
caccatact |
488376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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