View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_34 (Length: 242)
Name: NF10661_low_34
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40447382 - 40447606
Alignment:
| Q |
1 |
aatgaaaaggaactagcattgataaccaagagatgaagtttctctatttctctatatacattcaccatcactgccttatctttctcacagaggattcgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40447382 |
aatgaaaaggaactagcattgataaccaagagatgaagtttctctatttctctatatacattcaccatcactgccttatctttctcacagaggattcgga |
40447481 |
T |
|
| Q |
101 |
tcagcacattcttccccgacaagctagcttcaacttcaggcagtgacagatttgtttttgatgtttcatcagagtttccattacatgaatttgacgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40447482 |
tcagcacattcttccccgacaagctagcttcaacttcaggcagtgacagatttgtttttgatgtttcatcagagtttccattacatgaatttgacgaagt |
40447581 |
T |
|
| Q |
201 |
gtccgaaacatcttcatctgaagac |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
40447582 |
gtccgaaacatcttcatctgaagac |
40447606 |
T |
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