View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10661_low_35 (Length: 241)
Name: NF10661_low_35
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42093342 - 42093115
Alignment:
| Q |
1 |
ttgttgctgctcagtttgtactaggcccacattctcatttcttggacatggttcttctccatagccagtggacaatttcaatgacacatctgaagaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42093342 |
ttgttgctgctcagtttgtactaggcccacattctcatttcttggacatggttcttctccatagccagtggacaatttcaatgacacatctgaagaagaa |
42093243 |
T |
|
| Q |
101 |
gaag---tgttgttatttcctggcattgaaattgagagacatgtggaggatgacccaccattgttttcagcattgtcagagtcttgcagtgatcgtggcc |
197 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42093242 |
gaagaagtgttgttatttcctggcattgaaattgagagacatgtggaggatgacccaccattgttttcagcattgtcagagtcttgcagtgatcgtggcc |
42093143 |
T |
|
| Q |
198 |
aatcgtcaaagaaatgccttagcatttg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
42093142 |
aatcgtcaaagaaatgccttagcatttg |
42093115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University