View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_38 (Length: 236)
Name: NF10661_low_38
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 44001146 - 44001345
Alignment:
| Q |
1 |
tgctggactttatgcttttctgtggaacccttcccttagaagatacaatgtattgtctcctttggaaaatccggaggagagtgacgggagtacttcttat |
100 |
Q |
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| T |
44001146 |
tgctggactttatgcttttctgtggaacccgtcccttagaagatacaatgtattgcctcctttggaaaatccggaggagagtgacggaagtacttcttat |
44001245 |
T |
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| Q |
101 |
ttatatagctttgggtatgatcattttaataatgtttacaaggttgttgctatttctcacttcaaggacaaaaacaaacaaaaagaatgaagttagtgtt |
200 |
Q |
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| T |
44001246 |
gtatatagctttgggtatgatcatttcagtaatgtttacaaggttgttgctatttctcacctccatgac----acaaacaaaaagaatgaagttagtgtt |
44001341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 43991590 - 43991726
Alignment:
| Q |
21 |
tgtggaacccttcccttagaagatacaatgtattgtctcctttggaaaatccggaggagagtgacgggagtacttcttatttatatagctttgggtatga |
120 |
Q |
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| T |
43991590 |
tgtggaacccttccattataagatacaatatgttgcctcctttggaaaatccggaggagagtgacgggagta---cttatttatatagctttgggtatga |
43991686 |
T |
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| Q |
121 |
tcattttaataatgtttacaaggttgttgctatttctcac |
160 |
Q |
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| T |
43991687 |
tcatttcaatgatgtttataaggttgttgctatttctcac |
43991726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43997147 - 43997195
Alignment:
| Q |
1 |
tgctggactttatgcttttctgtggaacccttcccttagaagatacaat |
49 |
Q |
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| T |
43997147 |
tgctggacattctgcttttctgtggaatccttcccttagaagatacaat |
43997195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 43997207 - 43997277
Alignment:
| Q |
106 |
tagctttgggtatgatcattttaataatgtttacaaggttgttgctatttctcacttcaaggacaaaaaca |
176 |
Q |
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|||| |||| |||||| |||| ||| ||||||| |||||||||||| ||||| |||||| |||||||||| |
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| T |
43997207 |
tagcattggatatgataatttcaatgatgtttataaggttgttgctgtttctttcttcaatgacaaaaaca |
43997277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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