View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10661_low_4 (Length: 425)
Name: NF10661_low_4
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 45541380 - 45540970
Alignment:
| Q |
1 |
tttgtagtttgactactctccattatgacctctctcattgtctcagcagcttttgcttcagttaccttcaaaccttcttcgtgaagttcggcagttccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45541380 |
tttgtagtttgactactctccattatgacctctctcattgtctcagcagcttttgcttcagttaccttcaaaccttcttcgtgaagttcggcagttccct |
45541281 |
T |
|
| Q |
101 |
tgcttatagcgttgaatttattcacaggtactggaggttgatgatttggcgaagcaatatgctgatcggacatatatacatcaccagacttatctaaatc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45541280 |
tgctaatagcgttgaatttattcacaggtactggaggttgatgatttggcgaagcaatatactgatcggacatacatacatcaccagacttatctaaatc |
45541181 |
T |
|
| Q |
201 |
agaagaagatttgaagcaagctagttcacttgagaaacttgtatttcccatataaatgctgaagagtgattcgttagaggcagtgctccattctactggg |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45541180 |
agaaga---tttgaagcaagctagttcacttgagaaacttgtatttcccatataaatgctgaagagtgattcgttagaggcagtgctccattctactggg |
45541084 |
T |
|
| Q |
301 |
gcatttgtattgtttctagcaaatacatgagatggaaagacatattgggcattagtcacattttcacttggacgctccatcaattgtatcggcgggtttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45541083 |
gcatttgtattgtttctagcaaatacatgagatggaaagacatattgggcattagtcacattttcacttggacgctccatcaattgtatcggcgggtttt |
45540984 |
T |
|
| Q |
401 |
gtatctctgctcct |
414 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
45540983 |
gtatctctggtcct |
45540970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 7927504 - 7927458
Alignment:
| Q |
19 |
tccattatgacctctctcattgtctcagcagcttttgcttcagttac |
65 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| | |||||||| |
|
|
| T |
7927504 |
tccattataacctgtctcattgtctcagcagctttttcctcagttac |
7927458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University